Showing : MicroarrayData • reset
1
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Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
8 weeks ago Mj.A. • 0
5
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7
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498
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DEG Filtering
MicroarrayData limma Genefiltering
updated 8 weeks ago by 50k • written 9 weeks ago by • 0
2
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6
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585
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limma: vooma mean-variance trend and data filtration
MicroarrayData limma
11 weeks ago • updated 8 weeks ago Lily Cheang ▴ 10
0
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3
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607
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Is it possible to extract the expression of a single group without making comparisons?
MicroarrayData hta20transcriptcluster.db
updated 9 months ago by 50k • written 9 months ago by • 0
5
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8
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1.5k
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Can the limma package be applied to Log2 RUV-normalized data?
RUVnormalizeData MicroarrayData limma
updated 5 months ago by • 0 • written 12 months ago by ▴ 10
1
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2
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781
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Error in getCdfInfo(object) :
MicroarrayData
13 months ago kobra • 0
0
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0
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645
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
15 months ago jsharif • 0
2
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1
reply
546
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Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 15 months ago by 66k • written 15 months ago by • 0
0
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1
reply
651
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Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 15 months ago by 66k • written 15 months ago by • 0
0
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2
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955
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Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
16 months ago dqt • 0
2
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2
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577
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2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
19 months ago evan.j.williams ▴ 10
0
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17
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2.3k
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Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 15 months ago by 50k • written 19 months ago by • 0
0
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1
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535
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Finding negative control in the array using R
R MicroarrayData
updated 21 months ago by 66k • written 21 months ago by • 0
0
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0
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528
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Filtering single-channel Affymetrix probes
filtering probe MicroarrayData
21 months ago Fatemeh • 0
2
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2
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983
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the difference between getGEO and getGEOSuppFiles
MicroarrayData
21 months ago Fatemeh • 0
1
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1
reply
642
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IS DGE possible with normalized microarray expression data and Limma ?
limma MicroarrayData
updated 22 months ago by 66k • written 22 months ago by • 0
0
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1
reply
695
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 23 months ago by 50k • written 23 months ago by • 0
0
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8
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1.5k
views
Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
23 months ago YC • 0
1
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2
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840
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Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
23 months ago Mikołaj Mierzejewski • 0
1
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2
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1.1k
views
Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
23 months ago Mikołaj Mierzejewski • 0
0
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2
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797
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Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
2.1 years ago • updated 2.0 years ago amir.rakhimov.b • 0
0
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2
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787
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How to extract probe level intensity after rma() normalization
MicroarrayData AffymetrixChip
updated 2.1 years ago by 66k • written 2.1 years ago by • 0
0
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4
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935
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getProbeInfo and exprs return two different dimensions
CELfile MicroarrayData AffymetrixChip
2.2 years ago • updated 2.1 years ago Haoran • 0
0
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1
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886
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R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar DEGseq MicroarrayData
updated 2.5 years ago by 66k • written 2.5 years ago by • 0
0
votes
1
reply
702
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 2.6 years ago by 50k • written 2.6 years ago by • 0
1
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3
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1.2k
views
Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 2.6 years ago by 66k • written 2.7 years ago by • 0
0
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2
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660
views
Adj. P-value identical and high for all the genes
MicroarrayData
2.7 years ago Adriana • 0
1
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1
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1.2k
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 2.7 years ago by 66k • written 2.7 years ago by ▴ 50
3
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5
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1.7k
views
Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 2.9 years ago by 50k • written 3.0 years ago by • 0
1
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1
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1.3k
views
How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by • 0
0
votes
2
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2.1k
views
How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
3.1 years ago waiyin0923 • 0
0
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2
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1.7k
views
WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
3.3 years ago • updated 3.2 years ago jpwl2 • 0
6
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4
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1.3k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
3.3 years ago snijesh ▴ 20
3
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9
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1.5k
views
limma analysis when only Cy5 was used
MicroarrayData limma Microarray
3.3 years ago Daniel.Schnell • 0
34 results • Page 1 of 1
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Answer: Get gene symbols for a set of hg19 coordinates by ATpoint ★ 4.1k
Simply download a GTF file (for example from GENCODE) matching the current genome and/or annotation version you are using in your project a…
Comment: Not able to install any Bioconductor 3.18 package [unable to access index] by ATpoint ★ 4.1k
Try the mirror suggestion for now: https://support.bioconductor.org/p/9153734/#9153755
Comment: unable to access bioconductor packages - qvalue installation failed... by ATpoint ★ 4.1k
Seems to be a general problem at the moment, can reproduce. The the mirror suggestion here: https://support.bioconductor.org/p/9153734/#915…
Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman by Karosham.Reddy • 0
Thank you for the suggestion the ENmix version is using is ENmix_1.38.01. I tried your suggested code, R identified the idat files but sti…
Comment: pathview error by Guido Hooiveld ★ 4.0k
> Will removing the NA values help solve the problem? Did you try? And, FWIW, in the cases I had ensembl-based RNA-seq datasets I removed…
Votes
Comment: recount3 problem downloading data from source sra
Not able to install any Bioconductor 3.18 package [unable to access index]
unable to access bioconductor packages - qvalue installation failed...
Not able to install any Bioconductor 3.18 package [unable to access index]
can't open mghp.osn.xsede.org
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