Showing : MicroarrayData • reset
6
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4
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1.3k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
3.3 years ago snijesh ▴ 20
5
votes
7
replies
497
views
DEG Filtering
MicroarrayData limma Genefiltering
updated 7 weeks ago by 50k • written 9 weeks ago by • 0
5
votes
8
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1.5k
views
Can the limma package be applied to Log2 RUV-normalized data?
RUVnormalizeData MicroarrayData limma
updated 5 months ago by • 0 • written 12 months ago by ▴ 10
3
votes
9
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1.5k
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limma analysis when only Cy5 was used
MicroarrayData limma Microarray
3.3 years ago Daniel.Schnell • 0
3
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5
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1.7k
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Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 2.9 years ago by 50k • written 3.0 years ago by • 0
2
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2
replies
576
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2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
19 months ago evan.j.williams ▴ 10
2
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6
replies
582
views
limma: vooma mean-variance trend and data filtration
MicroarrayData limma
10 weeks ago • updated 8 weeks ago Lily Cheang ▴ 10
2
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2
replies
981
views
the difference between getGEO and getGEOSuppFiles
MicroarrayData
21 months ago Fatemeh • 0
2
votes
1
reply
546
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 15 months ago by 66k • written 15 months ago by • 0
1
vote
1
reply
1.3k
views
How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by • 0
1
vote
1
reply
642
views
IS DGE possible with normalized microarray expression data and Limma ?
limma MicroarrayData
updated 22 months ago by 66k • written 22 months ago by • 0
1
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2
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778
views
Error in getCdfInfo(object) :
MicroarrayData
13 months ago kobra • 0
1
vote
2
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243
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
8 weeks ago Mj.A. • 0
1
vote
1
reply
1.2k
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 2.7 years ago by 66k • written 2.7 years ago by ▴ 50
1
vote
2
replies
1.1k
views
Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
23 months ago Mikołaj Mierzejewski • 0
1
vote
2
replies
840
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Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
23 months ago Mikołaj Mierzejewski • 0
1
vote
3
replies
1.2k
views
Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 2.6 years ago by 66k • written 2.7 years ago by • 0
0
votes
17
replies
2.3k
views
Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 15 months ago by 50k • written 19 months ago by • 0
0
votes
2
replies
660
views
Adj. P-value identical and high for all the genes
MicroarrayData
2.7 years ago Adriana • 0
0
votes
1
reply
693
views
Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 23 months ago by 50k • written 23 months ago by • 0
0
votes
3
replies
605
views
Is it possible to extract the expression of a single group without making comparisons?
MicroarrayData hta20transcriptcluster.db
updated 9 months ago by 50k • written 9 months ago by • 0
0
votes
1
reply
534
views
Finding negative control in the array using R
R MicroarrayData
updated 20 months ago by 66k • written 20 months ago by • 0
0
votes
2
replies
1.7k
views
WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
3.3 years ago • updated 3.2 years ago jpwl2 • 0
0
votes
2
replies
2.1k
views
How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
3.1 years ago waiyin0923 • 0
0
votes
1
reply
650
views
Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 15 months ago by 66k • written 15 months ago by • 0
0
votes
2
replies
784
views
How to extract probe level intensity after rma() normalization
MicroarrayData AffymetrixChip
updated 2.1 years ago by 66k • written 2.1 years ago by • 0
0
votes
2
replies
955
views
Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
16 months ago dqt • 0
0
votes
0
replies
527
views
Filtering single-channel Affymetrix probes
filtering probe MicroarrayData
21 months ago Fatemeh • 0
0
votes
4
replies
932
views
getProbeInfo and exprs return two different dimensions
CELfile MicroarrayData AffymetrixChip
2.2 years ago • updated 2.1 years ago Haoran • 0
0
votes
2
replies
797
views
Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
2.1 years ago • updated 2.0 years ago amir.rakhimov.b • 0
0
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8
replies
1.5k
views
Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
23 months ago YC • 0
0
votes
1
reply
885
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar DEGseq MicroarrayData
updated 2.5 years ago by 66k • written 2.5 years ago by • 0
0
votes
0
replies
642
views
Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
15 months ago jsharif • 0
0
votes
1
reply
701
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 2.6 years ago by 50k • written 2.6 years ago by • 0
34 results • Page 1 of 1
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Comment: recount3 problem downloading data from source sra by PABLO ANTONIO • 0
Hello Leonardo, Thanks for commenting on possible solutions. I noticed comparing your session info that I was using the previous version o…
Comment: seqlevelsStyle() not working by websterdelacruz2087055 • 0
Specify the new URL new_url <- "https://hgdownload2.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz" Use the new URL to download th…
Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0
Yes, thank you. I have another error now, may you please guide me. here is the code that I used till using vep: ```r # bam_path <- "~/pat…
Comment: slingshot: error with plot3d.SlingshotDataSet by Happiness • 0
Hi please i am encountering similar issue how did you fix it. Here is the code: ## Run Slingshot p3.neuron.sds <- slingshot(Embeddings(…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by mohammedtoufiq91 ▴ 10
https://support.bioconductor.org/u/5106/ thank you very much.
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
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