Showing : RnBeads • reset
0
votes
3
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985
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 12 months ago by ▴ 780 • written 12 months ago by ▴ 10
0
votes
0
replies
439
views
rnbeads inference
epigenetics RnBeads
15 months ago Jitendra ▴ 10
0
votes
0
replies
579
views
normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
2.2 years ago Jitendra ▴ 10
0
votes
0
replies
745
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.2 years ago Jitendra ▴ 10
0
votes
8
replies
1.9k
views
error in RnBeads installation
Epigenetics RnBeads R
2.2 years ago Jitendra ▴ 10
1
vote
1
reply
868
views
How to export methylation tracks in bed format
RnBeads
updated 3.2 years ago by 66k • written 3.2 years ago by ▴ 10
0
votes
0
replies
833
views
How to know the number of detected CpG islands with RnBeads
RnBeads
3.2 years ago Federica ▴ 10
0
votes
0
replies
1.0k
views
How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
3.2 years ago D ▴ 10
1
vote
2
replies
1.6k
views
How to install Ghostscript in windows?
RnBeads.hg19 RnBeads
written 3.2 years ago by ▴ 10
2
votes
4
replies
1.3k
views
How to launch the RnBeads Data Juggler?
RnBeads
3.2 years ago Federica ▴ 10
2
votes
9
replies
1.9k
views
Installation of RnBeads package fails on Ubuntu 18.04.5 LTS
RnBeads
updated 2.6 years ago by • 0 • written 3.5 years ago by • 0
2
votes
3
replies
1.1k
views
RnBeads::combine() - error?
RnBeads Rnbeads2.0 RnBeads2
updated 3.1 years ago by ▴ 50 • written 3.9 years ago by ▴ 10
0
votes
0
replies
806
views
Is rnb.execute.import() has a bug in reading bismarkCytosine formart bed file? coordinates seem to be shifted by 1
RnBeads
4.1 years ago caoy4g4 • 0
0
votes
2
replies
1.9k
views
RnBeads set ghost script environment variable
RnBeads ghostscript
4.6 years ago Kathrin.Klee • 0
1
vote
3
replies
1.2k
views
Obtaining annotated results from rnbeads
rnbeads EPIC
updated 4.9 years ago by ▴ 50 • written 5.0 years ago by ★ 1.1k
0
votes
3
replies
1.1k
views
Trouble creating an RnBeads annotation for rn6 rat genome build
RnBeads rn6 RnBeadsAnnotationCreator
updated 5.3 years ago by ▴ 50 • written 5.3 years ago by • 0
0
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1
reply
1.1k
views
RnBeads "The analysis directory does not contain RnBSet objects"
rnbeads
6.0 years ago neuro3030 • 0
0
votes
1
reply
1.4k
views
RnBeads data preprocessing error
RnBeads
updated 6.2 years ago by • 0 • written 6.6 years ago by • 0
0
votes
0
replies
1.1k
views
differential methylation analysis with RnBeads
rnbeads methylation methylationepic dna methylation
6.2 years ago gabrielrfries • 0
1
vote
1
reply
1.5k
views
Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
6.5 years ago preethibagopi28 ▴ 10
0
votes
0
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1.1k
views
Is it possible to use Rnbeads with WGBS data from epigenetics roadmap/ucsc data
rnbeads wgbs
6.7 years ago Theo ▴ 10
0
votes
2
replies
2.2k
views
how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
minfi RnBeads noob preprocessFunnorm BMIQ
updated 7.1 years ago by ★ 6.5k • written 7.1 years ago by ▴ 10
0
votes
0
replies
1.0k
views
'type = genes' for RnBeads::meth() function
rnbeads
7.3 years ago Tom ▴ 10
0
votes
0
replies
1.3k
views
Importing Infinium data files using RnBeads::rnb.execute.import()
RnBeads
7.5 years ago Habil Zare ▴ 200
0
votes
0
replies
1.0k
views
RnBeads, enrichment analysis
rnbeads
7.6 years ago gaiusjaugustus • 0
0
votes
0
replies
1.5k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
7.7 years ago rasii • 0
4
votes
4
replies
3.0k
views
How to remove unwanted probes before normalization in 450k data
minfi 450k champ rnbeads
updated 8.2 years ago by 66k • written 8.2 years ago by ▴ 60
0
votes
2
replies
2.3k
views
error nonzero exit
illuminahumanmethylation450k.db rnbeads
updated 8.3 years ago by • 0 • written 8.8 years ago by • 0
0
votes
2
replies
1.3k
views
RnBeads - save state between data crunching and report generation checkpoints within the differential methylation module?
rnbeads xserver headless-r x11
8.3 years ago areyoujokingme • 0
0
votes
0
replies
2.2k
views
RnBeads check.names error:: "formal argument "check.names" matched by multiple actual arguments"
rnbeads software error
8.5 years ago • updated 8.4 years ago areyoujokingme • 0
2
votes
7
replies
2.1k
views
ggbio, RnBeads and 3.2.2
ggbio rnbeads rversion3.2.2
8.5 years ago areyoujokingme • 0
0
votes
1
reply
1.5k
views
RnBeads - test statistics for rnb.run.differential
RnBeads
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 120
0
votes
1
reply
1.2k
views
RnBeads and technical replicates in differential analysis
rnbeads replicates
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 40
0
votes
2
replies
1.9k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
8.5 years ago Brian Smith ▴ 120
1
vote
9
replies
2.2k
views
RnBeads fails with error in version 1.2 with GRanges v1.22.0
RnBeads
updated 8.5 years ago by • 0 • written 8.6 years ago by • 0
1
vote
1
reply
1.7k
views
RnBeads - doesn't produce pdfs
rnbeads illumina450k
updated 8.6 years ago by ▴ 10 • written 8.6 years ago by ▴ 120
0
votes
2
replies
1.7k
views
rnBeads error for the report path
software error rnbeads
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by • 0
0
votes
1
reply
1.8k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads error as.vector(data) s4vectors s4
8.7 years ago schasse • 0
0
votes
3
replies
3.0k
views
RnBeads cannot locate libjasper.so.1
rnbeads gs ghostscript shared libraries cluster
8.8 years ago bmreilly • 0
2
votes
4
replies
2.4k
views
Package RnBeads not available for R 3.1.2?
RnBeads packages R 3.1.2
8.8 years ago bmreilly • 0
40 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Thank you so much!
Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
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