Showing : S4Vectors • reset
1
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1
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5.2k
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Error trying to install GenomicRanges
cummerbund rtracklayer genomicranges s4vectors iranges
updated 8.3 years ago by ★ 6.5k • written 8.3 years ago by • 0
5
votes
3
replies
3.8k
views
Add new columns to DESeqResults from text file by matching rownames.
deseq2 deseq merge data frames cbind s4vectors
updated 6.6 years ago by 42k • written 6.6 years ago by ▴ 10
1
vote
2
replies
3.3k
views
Error in installation S4Vectors package
s4vectors
updated 8.4 years ago by ★ 8.2k • written 8.4 years ago by • 0
0
votes
7
replies
3.3k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
4.6 years ago james.dalgleish ▴ 30
0
votes
1
reply
3.2k
views
problem in loading Deseq2
deseq2 S4Vectors
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
3
votes
2
replies
2.6k
views
Convert DataFrame to data.frame While Keeping Column Name Syntax
S4Vectors
updated 2.9 years ago by 65k • written 2.9 years ago by ★ 1.5k
3
votes
12
replies
2.6k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.1 years ago sergi.picart ▴ 20
3
votes
8
replies
2.5k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors Matrix
7.3 years ago • updated 7.2 years ago peter.kharchenko ▴ 30
1
vote
4
replies
2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
10
votes
10
replies
2.4k
views
Does package S4Vectors break ifelse?
S4Vectors ifelse
updated 6.9 years ago by ▴ 40 • written 8.8 years ago by ★ 3.0k
1
vote
7
replies
2.3k
views
What to do when all the installation methods for a package fail (pagoo)?
S4Vectors pagoo
23 months ago MauriAndres • 0
11
votes
17
replies
2.3k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors DataFrame haven_labelled haven
updated 17 months ago by ▴ 20 • written 17 months ago by ▴ 30
4
votes
10
replies
2.2k
views
Printing DataFrame with nested DataFrames causes error
s4vectors dataframe
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 70
5
votes
10
replies
2.2k
views
caught segfault error when loading S4Vectors package in R
R S4Vectors segfault
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 20
2
votes
2
replies
2.1k
views
Problem when installing DESeq on MAC OS X
s4vectors mac os x deseq
updated 8.2 years ago by ★ 13k • written 8.2 years ago by • 0
3
votes
12
replies
2.1k
views
S4Vectors and subectHits error
s4vectors copywriter
updated 6.1 years ago by ★ 11k • written 6.1 years ago by ▴ 200
0
votes
15
replies
2.0k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor iranges s4vectors xvector r 3.3.2
updated 5.8 years ago by ▴ 10 • written 5.8 years ago by • 0
2
votes
2
replies
2.0k
views
Error in installation of scran
S4Vectors IRanges XVector GenomicRanges scran
updated 5.3 years ago by ★ 28k • written 5.3 years ago by • 0
0
votes
1
reply
1.9k
views
How to install S4Vector package in R v 3.1.1?
s4vectors R 3.1.1
updated 9.0 years ago by 16k • written 9.0 years ago by ▴ 30
0
votes
6
replies
1.9k
views
Problem installing S4Vectors on Mac Mini M1 Big Sur
S4Vectors
2.6 years ago • updated 2.5 years ago Richard • 0
1
vote
11
replies
1.8k
views
Error uploading deseq2
deseq2 S4Vectors
updated 4.1 years ago by 25k • written 4.1 years ago by • 0
0
votes
1
reply
1.8k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads error as.vector(data) s4vectors s4
8.7 years ago schasse • 0
2
votes
9
replies
1.7k
views
S4Vectors not loading
S4Vectors
4.2 years ago Panos Balomenos • 0
1
vote
4
replies
1.7k
views
IRanges missing S4Vectors_defines.h
iranges s4vectors
updated 9.1 years ago by 16k • written 9.1 years ago by ▴ 10
1
vote
2
replies
1.7k
views
Installation problem, S4Vectors, something about "apply_hotfix73465" not found
package installation s4vectors
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
0
votes
4
replies
1.7k
views
Unexpected behaviour of set operations on GRanges objects when dplyr is loaded
GenomicRanges S4Vectors dplyr
updated 5.3 years ago by 65k • written 5.3 years ago by ▴ 140
3
votes
5
replies
1.7k
views
How can I coerce "list" to S4 "List" (reproducible example is available)?
coercion data manipulation s4vectors List
7.8 years ago Jurat Shahidin ▴ 80
3
votes
2
replies
1.7k
views
Proper way to read in a DataFrame with CharacterList columns that was saved to a text file
s4vectors genomicranges
updated 7.9 years ago by ★ 11k • written 7.9 years ago by ★ 1.0k
0
votes
4
replies
1.6k
views
‘parallel_slot_names’ is not exported by 'namespace:S4Vectors'
S4Vectors
updated 3.4 years ago by 16k • written 3.4 years ago by • 0
0
votes
5
replies
1.6k
views
Using S4Vectors within a package
Package s4vectors
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 10
1
vote
3
replies
1.6k
views
Correct way to split and unsplit a DataFrame
s4vectors iranges
updated 4.7 years ago by ★ 11k • written 4.7 years ago by ▴ 90
2
votes
3
replies
1.6k
views
Is there an easy way to extend coverage to seqlengths and fill with zeroes?
coverage s4vectors seqlengths
8.2 years ago liz.ingsimmons ▴ 140
4
votes
6
replies
1.5k
views
breakTies for a Hits-object based on value in mcols?
s4vectors hits
updated 6.4 years ago by ★ 11k • written 6.4 years ago by ▴ 180
0
votes
6
replies
1.5k
views
Error: duplicate row.names
GenomicRanges methylKit S4Vectors
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
2
votes
3
replies
1.5k
views
"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
GenomicRanges rtracklayer VariantAnnotation S4Vectors SummarizedExperiment
updated 4.8 years ago by ★ 13k • written 4.8 years ago by ▴ 30
0
votes
1
reply
1.5k
views
Is S4Vectors not able to install in R-3.5.1?
S4Vectors R-3.5.1
5.4 years ago zhang303 • 0
5
votes
5
replies
1.5k
views
How to extract out wanted IntegerList more elegantly from nested list?
r s4vectors integerlist iranges
updated 7.6 years ago by ★ 11k • written 7.6 years ago by • 0
0
votes
1
reply
1.4k
views
simpleRNASeq stopped running (related to S4 vectors?)
simplernaseq easyrnaseq s4vectors
updated 8.4 years ago by ▴ 320 • written 8.4 years ago by • 0
0
votes
2
replies
1.4k
views
S4Vectors (and others) install error
s4vectors
updated 5.0 years ago by 42k • written 5.0 years ago by • 0
1
vote
2
replies
1.4k
views
Error running table() on an RleList returned by coverage()
GenomicRanges S4Vectors
updated 9.6 years ago by 16k • written 9.6 years ago by ★ 5.2k
0
votes
3
replies
1.3k
views
How can i fix this problem in R
S4Vectors DESeq2
updated 22 months ago by ★ 4.1k • written 22 months ago by • 0
1
vote
0
replies
1.3k
views
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene
6.6 years ago Leonardo Collado Torres ★ 1.0k
0
votes
0
replies
1.3k
views
no method for coercing this S4 class to a vector
mclust s4vectors S4 as.matrix .FCS
7.9 years ago anara92 • 0
0
votes
2
replies
1.2k
views
DataFrame matrix subsetting
DataFrame subsetting S4Vectors
updated 5.3 years ago by 16k • written 5.3 years ago by • 0
4
votes
4
replies
1.2k
views
S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconductor 3.17
S4Vectors
written 12 months ago by ▴ 90
3
votes
1
reply
1.1k
views
shiftApply verbosity (in ChIPQC)
ChIPQC s4vectors
updated 8.0 years ago by ▴ 420 • written 8.2 years ago by ▴ 140
4
votes
1
reply
1.0k
views
Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 2.3 years ago by 16k • written 2.4 years ago by ▴ 180
0
votes
0
replies
972
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges s4vectors rle rlelist
5.9 years ago endrebak85 ▴ 40
0
votes
1
reply
965
views
DataFrame showAsCell function
s4vectors
updated 7.6 years ago by ★ 11k • written 7.6 years ago by • 0
1
vote
1
reply
961
views
Bug report: unpredictable coloumn ranaming in DataFrame class
S4Vectors
updated 7.1 years ago by ★ 11k • written 7.1 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by sajadahmad41454 • 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results by swbarnes2 ★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma by Gordon Smyth 50k
No, it does not mean that. `voom()` uses the design matrix with the W covariates, to compute precision weights but not to adjust the log-cp…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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