Showing : bug • reset
0
votes
9
replies
3.5k
views
rhdf5 32-bit unsigned int issue
rhdf5 bug
updated 8.9 years ago by ▴ 550 • written 8.9 years ago by • 0
21
votes
24
replies
13k
views
Problem with biomart's listMarts function
biomart bug
updated 8.0 years ago by ▴ 470 • written 8.5 years ago by ★ 2.0k
1
vote
13
replies
3.0k
views
Several issues with the package easyRNASeq
easyrnaseq bug
8.9 years ago Michael Dondrup ▴ 10
1
vote
6
replies
4.1k
views
Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
software error bug crash Gviz
updated 7.8 years ago by ★ 1.6k • written 7.9 years ago by ▴ 160
3
votes
3
replies
2.6k
views
Transcripts in TxDb.Hsapiens.UCSC.hg38.knownGene but not in ucsc genome brower
annotation txdb.hsapiens.ucsc.hg38.knowngene bug
7.6 years ago shilin.zhao ▴ 40
6
votes
3
replies
2.1k
views
Possible bug in Rsubread Phred-Score read
rsubread bug alignment
updated 9.5 years ago by ★ 3.6k • written 9.5 years ago by ▴ 20
0
votes
4
replies
1.7k
views
beadarray: readIllumina with sample sheet broken due to Illumina switching to 12 digit chip identifiers
beadarray bug illumina human ht-12 v4 illumina beadchip
updated 7.0 years ago by ★ 1.1k • written 7.1 years ago by • 0
1
vote
3
replies
1.3k
views
Unable to set colors in plotrt function in xcms package
xcms bug
9.1 years ago Johannes Rainer ★ 2.0k
3
votes
5
replies
1.7k
views
Selecting few ids from reactome.db
annotationdbi reactome.db bug
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 730
0
votes
6
replies
5.7k
views
DESeq2 1.6 mcols error
deseq2 bug
updated 9.5 years ago by • 0 • written 9.6 years ago by • 0
3
votes
2
replies
1.6k
views
EBImage read png causes R to crash
ebimage bug
8.5 years ago Henning Redestig ▴ 20
0
votes
4
replies
1.4k
views
Inconsistent geo_char for rse_tx
bug recount
5.4 years ago • updated 4.6 years ago Jacques.van-Helden • 0
1
vote
2
replies
1.3k
views
BiocCheck path escape issue
bioccheck bug
7.1 years ago • updated 7.0 years ago Michael Steinbaugh ▴ 90
5
votes
16
replies
2.3k
views
GSVA package scores are opposite on mac and windows
GSVA bug gsva bugs
updated 6.6 years ago by ★ 3.3k • written 6.6 years ago by ▴ 10
0
votes
2
replies
1.8k
views
Problem with GeneSetCollection after updating R devel packages.
bug gseabase example
7.3 years ago jcrodriguez ▴ 20
2
votes
3
replies
1.2k
views
Probable bug in GSEABase package.
software error bug gseabase
7.3 years ago jcrodriguez ▴ 20
0
votes
3
replies
1.4k
views
possible conflict between renameSeqLevels (TxDb) and isActiveSeq (TxDb)
bug txdb genomicfeatures
8.7 years ago Robert K. Bradley ▴ 40
1
vote
2
replies
1.9k
views
Error when using multiple heatmaps in ComplexHeatmaps
ComplexHeatmap bug
7.3 years ago brt381 • 0
0
votes
2
replies
4.9k
views
Possible bug in Biostrings::readAAStringSet
bug biostrings readAAStringSet
updated 7.7 years ago by ★ 1.2k • written 7.7 years ago by • 0
1
vote
5
replies
611
views
Manual creation of qPCRset does not work
bug nondetects HTqPCR
updated 6 months ago by • 0 • written 8 months ago by ▴ 230
3
votes
2
replies
1.4k
views
Bug: estimateSizeFactors in DESeq2 doesn't work with a single normalization control
deseq2 bug
updated 9.3 years ago by 42k • written 9.3 years ago by ★ 2.0k
0
votes
6
replies
1.9k
views
rtracklayer issue: Tracks don't show up
rtracklayer bug session
updated 9.1 years ago by ★ 11k • written 9.1 years ago by • 0
0
votes
1
reply
1.3k
views
GO.db/GOSim bugged or my bad?
go.db software error bug
updated 9.0 years ago by 16k • written 9.0 years ago by ▴ 10
0
votes
1
reply
892
views
Identical() fails in Biostrings package
biostrings bug
updated 8.9 years ago by 16k • written 8.9 years ago by ▴ 20
1
vote
5
replies
1.9k
views
biomaRt crashes when result contains missing values
biomaRt bug
updated 7.9 years ago by ★ 6.5k • written 7.9 years ago by • 0
0
votes
3
replies
1.4k
views
rtracklayer v1.30.0 can no longer import gff files
rtracklayer import.gff3 bug
updated 8.6 years ago by 16k • written 8.6 years ago by ★ 2.0k
2
votes
1
reply
1.2k
views
Bug Report for R Package "EBImage": log(image, base=2) is same as log(*) (natural log) instead of log2 (base 2).
bug ebimage
updated 8.5 years ago by ▴ 750 • written 8.5 years ago by ▴ 20
0
votes
1
reply
1.2k
views
BiocParallel-1.4.0 bplapply bug when using nested lists and MulticoreParam
biocparallel bug
updated 8.5 years ago by ★ 6.8k • written 8.5 years ago by • 0
1
vote
2
replies
1.2k
views
Downloading bt.exon_quantification with TCGAbiolinks
tcgabiolinks bug
8.1 years ago Marcel Ramos 700
1
vote
2
replies
1.6k
views
TCGAbiolinks 403 Forbidden Error
bug issue tcgabiolinks
updated 7.8 years ago by ▴ 270 • written 7.9 years ago by 700
1
vote
1
reply
1.7k
views
GSEABase getGmt() fails when more than 1 line contains duplicates
gseabase bug
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 10
0
votes
2
replies
1.2k
views
class "AsIs" is not valid for @'dataset' in an object of class "Mart"; is(value, "character")
bug biomart
7.5 years ago Philip Lijnzaad ▴ 160
2
votes
4
replies
2.1k
views
topGO crashes with ' argument "annotationFun" is missing, with no default'
bug topGO
updated 7.5 years ago by 65k • written 7.5 years ago by ▴ 160
3
votes
4
replies
1.6k
views
Different geneset same p-values in topGO
topgo bug
7.3 years ago • updated 3.7 years ago Lluís Revilla Sancho ▴ 730
1
vote
2
replies
1.4k
views
Error in Biostrings with Fastafiles using the carriage return <cr>
biostrings software error bug
updated 7.3 years ago by 16k • written 7.3 years ago by • 0
3
votes
2
replies
2.6k
views
Rqc - envir must be either NULL, a list, or an environment.
software error bug library
updated 7.3 years ago by ▴ 70 • written 7.3 years ago by ▴ 10
9
votes
2
replies
8.9k
views
Using RSEM with tximport and DESeq2
deseq2 tximport software error bug
updated 2.7 years ago by 42k • written 7.2 years ago by ▴ 10
3
votes
4
replies
1.2k
views
Does Rsamtools support tag names with number characters? i.e ."B1"
rsamtools bug
updated 7.1 years ago by 25k • written 7.1 years ago by • 0
3
votes
2
replies
1.4k
views
Crash GSVA 1.24.0 with bootstrapping
GSVA bug
updated 7.1 years ago by ★ 3.3k • written 7.1 years ago by ▴ 20
3
votes
2
replies
1.9k
views
coverage() output SimpleRleList cannot be converted to GRanges
bug genomicranges granges rlelist coverage
updated 6.3 years ago by 16k • written 6.3 years ago by ▴ 10
2
votes
1
reply
1.5k
views
Possible bug: outdated result from listDatabases()
KEGGREST bug
updated 6.8 years ago by ▴ 50 • written 6.8 years ago by • 0
0
votes
1
reply
923
views
GenomicRanges: Possible Bug
genomicranges bug
updated 6.6 years ago by 65k • written 6.6 years ago by • 0
0
votes
13
replies
1.9k
views
R 3.5.0/Bioconductor version 3.6: OS-dependent behavior divergence for list concatenation of SummarizedExperiment
summarizedexperiment bug 3.5.0
updated 6.0 years ago by 65k • written 6.0 years ago by • 0
1
vote
1
reply
1.1k
views
rTandem compilation failed
rtandem bug compilation error
6.0 years ago Ed Siefker ▴ 230
0
votes
1
reply
1.1k
views
DelayedArray install fails to UNC path
delayedarray bug installation
updated 5.8 years ago by 25k • written 5.9 years ago by • 0
0
votes
7
replies
2.2k
views
DEXSeqHTML getListElement GRanges error
dexseq software error bug
updated 5.5 years ago by ▴ 140 • written 5.5 years ago by • 0
0
votes
1
reply
1.0k
views
A recent update to readr cause issues loading data with GEOquery 2.50.0
version compatibility bug
updated 5.5 years ago by ★ 13k • written 5.5 years ago by • 0
0
votes
5
replies
937
views
GenomicFeatures supportedUCSCFeatureDbTracks never returns and has to be terminated with C-c
genomicfeatures bug
updated 5.5 years ago by 65k • written 5.5 years ago by ★ 1.6k
0
votes
3
replies
915
views
collapseReplicates changes order of factors
deseq2 bug
5.5 years ago António Miguel de Jesus Domingues ▴ 510
4
votes
2
replies
848
views
TENxPBMCData error loading PBMC4k data
bug TENxPBMCData
3.5 years ago zhe ▴ 20
50 results • Page 1 of 1
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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