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minfiData
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1
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4
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229
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minfi::read.metharray.exp
minfiData
minfi
updated 24 days ago by
Basti
▴ 780 • written 26 days ago by
clacarion
• 0
0
votes
1
reply
195
views
Matrix multiplication error to estimate telomere length
methylclockData
minfi
methylclock
minfidata
updated 11 weeks ago by
James W. MacDonald
65k • written 11 weeks ago by
sharangiiv
• 0
0
votes
3
replies
979
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 12 months ago by
Basti
▴ 780 • written 12 months ago by
Jitendra
▴ 10
0
votes
4
replies
1.0k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
updated 14 months ago by
James W. MacDonald
65k • written 14 months ago by
Grace
• 0
0
votes
5
replies
1.2k
views
minfi error read.metharray.exp
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
written 14 months ago by
Grace
• 0
0
votes
0
replies
883
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData
ChAMP
2.4 years ago
behr201
• 0
0
votes
0
replies
755
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi
minfiData
MethylationArrayData
2.8 years ago
ponche_de_kiwi
• 0
0
votes
1
reply
2.0k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 3.2 years ago by
suman
• 0 • written 3.2 years ago by
Bethan
• 0
1
vote
2
replies
2.0k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
moldach
▴ 20
0
votes
1
reply
1.5k
views
Problem loading minfi on macOS
minfi
minfidata
rgl.
mac os x
el capitan
updated 8.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.0 years ago by
holbrookjoanna
• 0
0
votes
1
reply
2.2k
views
Analyzing 450k Methylation from TCGA Website
minfidata
minfi
illuminahumanmethylation450k.db
illuminahumanmethylation450kanno.ilmn12.hg19
9.1 years ago
alejandretheodore
• 0
0
votes
2
replies
1.9k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi
minfidata
illumina
methylation
dmpfinder
updated 9.7 years ago by
James W. MacDonald
65k • written 9.7 years ago by
michael.zulyniak
• 0
12 results • Page
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Gordon Smyth
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Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
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Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
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Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
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Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
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Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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