Bioconductor MinfiData

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 14 months ago by Grace • 0

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252

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minfiData minfi

updated 4 weeks ago by Basti ▴ 780 • written 4 weeks ago by clacarion • 0

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 14 months ago by James W. MacDonald 66k • written 14 months ago by Grace • 0

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996

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RnBeads minfiData minfi EPICarray

updated 12 months ago by Basti ▴ 780 • written 12 months ago by Jitendra ▴ 10

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minfi methylation dataimport minfidata missmethyl

updated 5.7 years ago by James W. MacDonald 66k • written 5.7 years ago by moldach ▴ 20

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minfi minfidata illumina methylation dmpfinder

updated 9.7 years ago by James W. MacDonald 66k • written 9.7 years ago by michael.zulyniak • 0

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199

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methylclockData minfi methylclock minfidata

updated 12 weeks ago by James W. MacDonald 66k • written 12 weeks ago by sharangiiv • 0

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2.3k

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

9.1 years ago alejandretheodore • 0

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2.0k

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minfiData plotsex minfi minfiDataEPIC r

updated 3.2 years ago by suman • 0 • written 3.2 years ago by Bethan • 0

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1.5k

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minfi minfidata rgl. mac os x el capitan

updated 8.1 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.1 years ago by holbrookjoanna • 0

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888

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minfiData ChAMP

2.4 years ago behr201 • 0

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757

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minfi minfiData MethylationArrayData

2.8 years ago ponche_de_kiwi • 0

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Comment: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k

My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …

Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0

Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…

Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0

Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…

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DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

DESeq2 swap ensembl gene id rownames with gene symbol column

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

DESeq2: add annotations (from data frame) to DESeqDataSet

Add new columns to DESeqResults from text file by matching rownames.

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Popular Question to Robert Castelo ★ 3.3k