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minfiData
•
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1
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4
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252
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minfi::read.metharray.exp
minfiData
minfi
updated 4 weeks ago by
Basti
▴ 780 • written 4 weeks ago by
clacarion
• 0
0
votes
1
reply
199
views
Matrix multiplication error to estimate telomere length
methylclockData
minfi
methylclock
minfidata
updated 12 weeks ago by
James W. MacDonald
66k • written 12 weeks ago by
sharangiiv
• 0
0
votes
3
replies
996
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 12 months ago by
Basti
▴ 780 • written 12 months ago by
Jitendra
▴ 10
0
votes
4
replies
1.1k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
updated 14 months ago by
James W. MacDonald
66k • written 14 months ago by
Grace
• 0
0
votes
5
replies
1.3k
views
minfi error read.metharray.exp
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
written 14 months ago by
Grace
• 0
0
votes
0
replies
888
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData
ChAMP
2.4 years ago
behr201
• 0
0
votes
0
replies
757
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi
minfiData
MethylationArrayData
2.8 years ago
ponche_de_kiwi
• 0
0
votes
1
reply
2.0k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 3.2 years ago by
suman
• 0 • written 3.2 years ago by
Bethan
• 0
1
vote
2
replies
2.0k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 5.7 years ago by
James W. MacDonald
66k • written 5.7 years ago by
moldach
▴ 20
0
votes
1
reply
1.5k
views
Problem loading minfi on macOS
minfi
minfidata
rgl.
mac os x
el capitan
updated 8.1 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.1 years ago by
holbrookjoanna
• 0
0
votes
1
reply
2.3k
views
Analyzing 450k Methylation from TCGA Website
minfidata
minfi
illuminahumanmethylation450k.db
illuminahumanmethylation450kanno.ilmn12.hg19
9.1 years ago
alejandretheodore
• 0
0
votes
2
replies
1.9k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi
minfidata
illumina
methylation
dmpfinder
updated 9.7 years ago by
James W. MacDonald
66k • written 9.7 years ago by
michael.zulyniak
• 0
12 results • Page
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Replies
Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Votes
A: Analyzing data without replicates using DiffBind
A: Analyzing data without replicates using DiffBind
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
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