Showing : snp • reset
0
votes
3
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746
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt SNP
updated 14 months ago by 66k • written 14 months ago by • 0
0
votes
0
replies
530
views
Human to mouse SNP conversion
liftOver SNP GWASTools
14 months ago bonheur • 0
0
votes
4
replies
798
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
14 months ago Weiqiong • 0
0
votes
1
reply
903
views
How to remove INDELS/SNPs from a bed file
SNP
updated 18 months ago by 66k • written 18 months ago by • 0
0
votes
0
replies
495
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
19 months ago m610110001 • 0
0
votes
0
replies
681
views
ACMG Annotations for Variants in R
ACMG SNP
23 months ago hamza_karakurt ▴ 60
0
votes
2
replies
2.7k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 2.3 years ago by • 0
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.4 years ago by ▴ 870 • written 2.5 years ago by • 0
0
votes
1
reply
829
views
Get CHR & POS for a list of SNP rs ids (>1M)
POS CHR SNP rs
updated 2.6 years ago by 66k • written 2.6 years ago by • 0
0
votes
0
replies
878
views
Reading Affymetrix Axiom files
affy SNP axiom
3.0 years ago f.calboli • 0
0
votes
0
replies
747
views
Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.2 years ago Amber • 0
5
votes
4
replies
9.9k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 10 months ago by 66k • written 3.8 years ago by • 0
6
votes
11
replies
1.8k
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 3.8 years ago by ★ 6.5k • written 3.8 years ago by • 0
2
votes
2
replies
2.6k
views
How to convert 1000 genomes VCF files to the format of traditional SNP array format?
SNP 1000genome
updated 3.9 years ago by 25k • written 3.9 years ago by ▴ 20
1
vote
2
replies
1.3k
views
TCGA MAF (Mutations) data
TCGA MAF GDC snp mutations
updated 5.1 years ago by 21k • written 5.1 years ago by ▴ 160
0
votes
0
replies
827
views
genetic and linkage maps construction
genetic map linkage maps SNP assembly GBS
5.3 years ago mictadlo ▴ 10
0
votes
0
replies
760
views
R: estimating error rate of replicated samples
R SNP genotyping genetic diversity
5.4 years ago meriam.nef • 0
0
votes
0
replies
1.5k
views
How to extract SNPs from multiple alignment fasta file?
snp multiple sequence alignment fasta Tutorial
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
0
votes
11
replies
3.5k
views
SNP6 data to VCF
SNP oligo ASSIGN SNP oligo ASSIGN
updated 5.7 years ago by • 0 • written 12.3 years ago by 21k
0
votes
1
reply
1.2k
views
Finding/Understanding Affy 6.0 Annotation File
affy affymetrix microarray SNP
5.8 years ago CantExitVIM ▴ 10
3
votes
5
replies
1.6k
views
Understanding PureCN and its germline SNPs
PureCN germline SNP
updated 6.0 years ago by • 0 • written 6.2 years ago by ▴ 10
0
votes
1
reply
1.9k
views
VCF file non-SNP germline mutations
PureCN VCF SNP
updated 6.1 years ago by ▴ 130 • written 6.1 years ago by ▴ 10
0
votes
3
replies
2.1k
views
dbSNP - getting details of Pubmed ID for a SNP
SNP SNP
updated 6.2 years ago by • 0 • written 14.4 years ago by ▴ 180
0
votes
1
reply
1.3k
views
How to draw venn diagram with four CSV files
R SNP venn diagram
updated 6.3 years ago by 66k • written 6.3 years ago by • 0
0
votes
0
replies
836
views
Wtccc sanger dataset
SNP
6.3 years ago hadeel.alzoubi • 0
0
votes
1
reply
1.2k
views
How to map a SNP to all genes within 50kb (upstream or downstream) of the SNP?
annotation R snp
updated 6.9 years ago by 66k • written 6.9 years ago by ▴ 10
0
votes
0
replies
910
views
Error when changing the database for minfi dropLociWithSnps
minfi methylationepic illuminahumanmethylationepicanno.ilmn10b.hg19 SNP
6.9 years ago Ellen O • 0
2
votes
1
reply
1.3k
views
GenomicAlignments/access correct bp positions near indels
genomicranges genomicalignments snp
updated 7.1 years ago by 16k • written 7.1 years ago by ▴ 90
3
votes
4
replies
1.5k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs SNP dbsnp
7.3 years ago Ramiro Magno ▴ 100
1
vote
2
replies
3.5k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment SNP dnasequence
7.3 years ago lordbleys • 0
3
votes
3
replies
1.9k
views
Retrieve SNP flanking sequences in biomaRt
biomart snp upstream_flank downstream_flank
updated 7.5 years ago by ★ 6.5k • written 7.5 years ago by ▴ 20
0
votes
2
replies
1.6k
views
injectSNPS only for common variants
snp snplocs
updated 7.6 years ago by ★ 3.3k • written 7.6 years ago by • 0
0
votes
3
replies
2.3k
views
Gramene now available via biomaRt
SNP Transcription biomaRt Vega SNP Transcription biomaRt Vega
updated 7.6 years ago by • 0 • written 17.3 years ago by ▴ 580
0
votes
0
replies
1.1k
views
vizualization of mutations
genomes SNP
7.7 years ago Bogdan ▴ 670
0
votes
0
replies
1.1k
views
Illumina Genotyping in parallel raise an error
crlmm snp illumina
7.9 years ago nadne ▴ 10
1
vote
0
replies
2.1k
views
Job: Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
rnaseq snp chipseq Job
8.0 years ago altuna akalin ▴ 20
0
votes
1
reply
1.3k
views
Error with FunciSNP
snp R gwastools
8.1 years ago musomilan • 0
2
votes
3
replies
2.4k
views
ggbio circular plot
ggbio SNP granges
updated 8.4 years ago by ★ 11k • written 8.5 years ago by • 0
5
votes
9
replies
4.2k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber snp affymetrix
8.5 years ago KB ▴ 50
0
votes
1
reply
1.1k
views
Distance measure used by snpgdsPCA in SNPRelate
snp clustering
8.6 years ago mattcott • 0
1
vote
2
replies
2.1k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
updated 8.7 years ago by ▴ 20 • written 8.7 years ago by • 0
0
votes
0
replies
1.1k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
8.8 years ago Vincent J. Carey, Jr. 6.7k
0
votes
2
replies
3.8k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 8.9 years ago by • 0 • written 11.2 years ago by ★ 8.2k
0
votes
6
replies
2.3k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP Cancer SNPlocs SNP Cancer SNPlocs
updated 8.9 years ago by • 0 • written 15.0 years ago by 16k
0
votes
1
reply
1.3k
views
trouble with predictCoding( function
snp variantannotation predict coding
8.9 years ago vakul.mohanty ▴ 20
0
votes
2
replies
3.3k
views
Pipeline for analyzing CNV (SNP array) level 3 from TCGA
SNP CNV TCGA
9.1 years ago NS ▴ 60
0
votes
2
replies
4.8k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
9.2 years ago mrprao • 0
0
votes
0
replies
1.4k
views
DNAcopy default settings and SNP6.0 arrays
SNP DNAcopy SNP6.0 CNV
9.4 years ago giovanni.dario • 0
1
vote
6
replies
2.4k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs snp
9.5 years ago garrisrg ▴ 10
1
vote
2
replies
1.7k
views
biomaRt error message
biomaRt snp
updated 9.5 years ago by ▴ 800 • written 9.5 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: How to run allelic imbalance in apeglm by parayod376 • 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process") by James W. MacDonald 66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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