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snp
•
reset
0
votes
2
replies
2.7k
views
How to get the rsID of 4 million SNPA
ensembldb
SNP
SNPData
genomes
written 2.3 years ago by
Weiqiong
• 0
5
votes
4
replies
9.9k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 10 months ago by
James W. MacDonald
66k • written 3.8 years ago by
Mahan
• 0
0
votes
3
replies
746
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt
SNP
updated 14 months ago by
James W. MacDonald
66k • written 14 months ago by
Damien
• 0
0
votes
0
replies
530
views
Human to mouse SNP conversion
liftOver
SNP
GWASTools
14 months ago
bonheur
• 0
0
votes
4
replies
800
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium
SNP
gwas
GWASdata
ldblock
14 months ago
Weiqiong
• 0
0
votes
1
reply
903
views
How to remove INDELS/SNPs from a bed file
SNP
updated 18 months ago by
James W. MacDonald
66k • written 18 months ago by
Cian
• 0
0
votes
0
replies
495
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP
ExomeSeqData
snapcount
SNAData
SNPRelate
19 months ago
m610110001
• 0
0
votes
0
replies
682
views
ACMG Annotations for Variants in R
ACMG
SNP
23 months ago
hamza_karakurt
▴ 60
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate
SNP
GWASTools
Annotation
GWASdata
updated 2.4 years ago by
Stephanie M. Gogarten
▴ 870 • written 2.5 years ago by
Adrián
• 0
0
votes
1
reply
829
views
Get CHR & POS for a list of SNP rs ids (>1M)
POS
CHR
SNP
rs
updated 2.6 years ago by
James W. MacDonald
66k • written 2.6 years ago by
Mahan
• 0
0
votes
0
replies
878
views
Reading Affymetrix Axiom files
affy
SNP
axiom
3.0 years ago
f.calboli
• 0
0
votes
0
replies
747
views
Extract flanking sequences SNP without reference genome
SNPData
snpStats
SNP
flankingsequences
3.2 years ago
Amber
• 0
6
votes
11
replies
1.8k
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r
biomart
SNP
annotation
HUGO
updated 3.8 years ago by
Mike Smith
★ 6.5k • written 3.8 years ago by
aroso491
• 0
2
votes
2
replies
2.6k
views
How to convert 1000 genomes VCF files to the format of traditional SNP array format?
SNP
1000genome
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
syrttgump
▴ 20
1
vote
2
replies
1.3k
views
TCGA MAF (Mutations) data
TCGA
MAF
GDC
snp
mutations
updated 5.1 years ago by
Sean Davis
21k • written 5.1 years ago by
mario.zanfardino
▴ 160
0
votes
0
replies
827
views
genetic and linkage maps construction
genetic map
linkage maps
SNP
assembly
GBS
5.3 years ago
mictadlo
▴ 10
0
votes
0
replies
760
views
R: estimating error rate of replicated samples
R
SNP
genotyping
genetic diversity
5.4 years ago
meriam.nef
• 0
0
votes
0
replies
1.5k
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
pltbiotech_tkarthi
• 0
0
votes
11
replies
3.5k
views
SNP6 data to VCF
SNP
oligo
ASSIGN
SNP
oligo
ASSIGN
updated 5.7 years ago by
giulio.genovese
• 0 • written 12.3 years ago by
Sean Davis
21k
0
votes
1
reply
1.2k
views
Finding/Understanding Affy 6.0 Annotation File
affy
affymetrix
microarray
SNP
5.8 years ago
CantExitVIM
▴ 10
3
votes
5
replies
1.6k
views
Understanding PureCN and its germline SNPs
PureCN
germline
SNP
updated 6.0 years ago by
kakbrus
• 0 • written 6.2 years ago by
twtoal
▴ 10
0
votes
1
reply
1.9k
views
VCF file non-SNP germline mutations
PureCN
VCF
SNP
updated 6.1 years ago by
markus.riester
▴ 130 • written 6.1 years ago by
twtoal
▴ 10
0
votes
3
replies
2.1k
views
dbSNP - getting details of Pubmed ID for a SNP
SNP
SNP
updated 6.2 years ago by
hsiaoyi0504
• 0 • written 14.4 years ago by
Paul Evans
▴ 180
0
votes
1
reply
1.3k
views
How to draw venn diagram with four CSV files
R
SNP
venn diagram
updated 6.3 years ago by
James W. MacDonald
66k • written 6.3 years ago by
kwangseob
• 0
0
votes
0
replies
836
views
Wtccc sanger dataset
SNP
6.3 years ago
hadeel.alzoubi
• 0
0
votes
1
reply
1.2k
views
How to map a SNP to all genes within 50kb (upstream or downstream) of the SNP?
annotation
R
snp
updated 6.9 years ago by
James W. MacDonald
66k • written 6.9 years ago by
arbet003
▴ 10
0
votes
0
replies
910
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
6.9 years ago
Ellen O
• 0
2
votes
1
reply
1.3k
views
GenomicAlignments/access correct bp positions near indels
genomicranges
genomicalignments
snp
updated 7.1 years ago by
Hervé Pagès
16k • written 7.1 years ago by
Daniel.Berner@unibas.ch
▴ 90
3
votes
4
replies
1.5k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs
SNP
dbsnp
7.3 years ago
Ramiro Magno
▴ 100
1
vote
2
replies
3.5k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment
SNP
dnasequence
7.3 years ago
lordbleys
• 0
3
votes
3
replies
1.9k
views
Retrieve SNP flanking sequences in biomaRt
biomart
snp
upstream_flank
downstream_flank
updated 7.5 years ago by
Mike Smith
★ 6.5k • written 7.5 years ago by
anajacintafernandes
▴ 20
0
votes
2
replies
1.6k
views
injectSNPS only for common variants
snp
snplocs
updated 7.6 years ago by
Robert Castelo
★ 3.3k • written 7.6 years ago by
arubio
• 0
0
votes
3
replies
2.3k
views
Gramene now available via biomaRt
SNP
Transcription
biomaRt
Vega
SNP
Transcription
biomaRt
Vega
updated 7.6 years ago by
maialiaeb
• 0 • written 17.3 years ago by
Steffen Durinck
▴ 580
0
votes
0
replies
1.1k
views
vizualization of mutations
genomes
SNP
7.7 years ago
Bogdan
▴ 670
0
votes
0
replies
1.1k
views
Illumina Genotyping in parallel raise an error
crlmm
snp
illumina
7.9 years ago
nadne
▴ 10
1
vote
0
replies
2.1k
views
Job:
Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
rnaseq
snp
chipseq
Job
8.0 years ago
altuna akalin
▴ 20
0
votes
1
reply
1.3k
views
Error with FunciSNP
snp
R
gwastools
8.1 years ago
musomilan
• 0
2
votes
3
replies
2.4k
views
ggbio circular plot
ggbio
SNP
granges
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
Marcin Grzybowski
• 0
5
votes
9
replies
4.2k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber
snp
affymetrix
8.5 years ago
KB
▴ 50
0
votes
1
reply
1.1k
views
Distance measure used by snpgdsPCA in SNPRelate
snp
clustering
8.6 years ago
mattcott
• 0
1
vote
2
replies
2.1k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing
snp
updated 8.7 years ago by
Jan Oosting
▴ 20 • written 8.7 years ago by
markus.riester
• 0
0
votes
0
replies
1.1k
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
8.8 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
2
replies
3.8k
views
Bioconductor 2.12 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
Microarray
Coverage
Alignment
Annotation
GO
updated 8.9 years ago by
marksteve952
• 0 • written 11.2 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
6
replies
2.3k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP
Cancer
SNPlocs
SNP
Cancer
SNPlocs
updated 8.9 years ago by
genefan
• 0 • written 15.0 years ago by
Hervé Pagès
16k
0
votes
1
reply
1.3k
views
trouble with predictCoding( function
snp
variantannotation
predict coding
8.9 years ago
vakul.mohanty
▴ 20
0
votes
2
replies
3.3k
views
Pipeline for analyzing CNV (SNP array) level 3 from TCGA
SNP
CNV
TCGA
9.1 years ago
NS
▴ 60
0
votes
2
replies
4.8k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP
biomart
archive
grch37
9.2 years ago
mrprao
• 0
0
votes
0
replies
1.4k
views
DNAcopy default settings and SNP6.0 arrays
SNP
DNAcopy
SNP6.0
CNV
9.4 years ago
giovanni.dario
• 0
1
vote
6
replies
2.4k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs
snp
9.5 years ago
garrisrg
▴ 10
1
vote
2
replies
1.7k
views
biomaRt error message
biomaRt
snp
updated 9.5 years ago by
Thomas Maurel
▴ 800 • written 9.5 years ago by
Ting
▴ 10
50 results • Page
1 of 1
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Comment: How to run allelic imbalance in apeglm
by
parayod376
• 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process")
by
James W. MacDonald
66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
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Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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