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Comment: Comment: DESeq2 remove batch effect
15 months ago James W. MacDonald 67k
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1.6k
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Answer: Answer: DESeq2 remove batch effect
16 months ago James W. MacDonald 67k
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Comment: Comment: BSgenome for ensembl mm10
16 months ago James W. MacDonald 67k
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Comment: Comment: Model and Contrasts with 4 variables
16 months ago James W. MacDonald 67k
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1.0k
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Comment: Comment: Model and Contrasts with 4 variables
16 months ago James W. MacDonald 67k
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1.0k
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Answer: Answer: Model and Contrasts with 4 variables
16 months ago James W. MacDonald 67k
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369
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Answer: Answer: Is there a way to solve "the model matrix is not full rank", when just one of my
16 months ago James W. MacDonald 67k
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2.8k
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Comment: Comment: DeSEQ 2 Error: some values in assay are negative
16 months ago James W. MacDonald 67k
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1.6k
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Answer: Answer: P-value histogram of testLinearModel is not uniform
16 months ago James W. MacDonald 67k
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531
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Answer: Answer: How to use txtimport and do differential expression
16 months ago James W. MacDonald 67k
1
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1
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912
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Answer: Answer: How to perform a methylation analyisis from m values
16 months ago James W. MacDonald 67k
1
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1.6k
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Comment: Comment: Diffbind "No genome detected"
16 months ago James W. MacDonald 67k
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1.6k
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Answer: Answer: Diffbind "No genome detected"
16 months ago James W. MacDonald 67k
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541
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Answer: Answer: Generate false reads for testing
16 months ago James W. MacDonald 67k
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1
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941
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Answer: Answer: Extract Limma Adjusted Values for Plotting
16 months ago James W. MacDonald 67k
0
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1
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828
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Answer: Answer: Multitasking and Rbwa
16 months ago James W. MacDonald 67k
2
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1
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1.5k
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Answer: Answer: Question about setting threshold using filtering by expression on genes in edgeR
16 months ago James W. MacDonald 67k
1
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971
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Answer: Answer: Getting different differentially accessible peaks between versions
16 months ago James W. MacDonald 67k
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1
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930
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Answer: Answer: problem while retriving the genes by using p value and log2fc as conditions
16 months ago James W. MacDonald 67k
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3.4k
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Comment: Comment: Sudden error with KEGG analysis using gometh
16 months ago James W. MacDonald 67k
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2.8k
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Answer: Answer: Keep getting this error "Warning: unable to access index for repository"?
16 months ago James W. MacDonald 67k
3
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7
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2.2k
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Installing densvis on a Singularity container
densvis docker
updated 16 months ago by ▴ 160 • written 17 months ago by 67k
1
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2.2k
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Answer: Answer: Installing densvis on a Singularity container
16 months ago James W. MacDonald 67k
0
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838
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Answer: Answer: Which file in tximport should I use for DESeq2 analysis?
16 months ago James W. MacDonald 67k
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900
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Comment: Comment: Error in champ.load() function
16 months ago James W. MacDonald 67k
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1
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900
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Answer: Answer: Error in champ.load() function
17 months ago James W. MacDonald 67k
0
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1
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1.3k
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Answer: Answer: Batch correction using control probes in EPIC array data
17 months ago James W. MacDonald 67k
0
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1
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522
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Answer: Answer: justRMA or similar for normalization with hg133a and hg133plus
17 months ago James W. MacDonald 67k
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1.0k
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Comment: Comment: How to find probe enhancer annotation for Illumina EPIC array?
17 months ago James W. MacDonald 67k
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1
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1.0k
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Answer: Answer: How to find probe enhancer annotation for Illumina EPIC array?
17 months ago James W. MacDonald 67k
0
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0
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762
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Comment: Comment: Docker usage with Trio Bioconductor Package
17 months ago James W. MacDonald 67k
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1.1k
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Comment: Comment: Why is RNA-Seq library size not constant among samples?
17 months ago James W. MacDonald 67k
0
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0
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940
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Comment: Comment: Is the gene-specific PCR efficiency a serious concern for intrasample comparison
17 months ago James W. MacDonald 67k
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0
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665
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Answer: Answer: `MOFAobject@expectations` is empty list
17 months ago James W. MacDonald 67k
0
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1
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1.1k
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Comment: Comment: Why is RNA-Seq library size not constant among samples?
17 months ago James W. MacDonald 67k
0
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2
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940
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Answer: Answer: Is the gene-specific PCR efficiency a serious concern for intrasample comparison
17 months ago James W. MacDonald 67k
0
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0
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619
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Comment: Comment: Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in
17 months ago James W. MacDonald 67k
1
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1
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1.9k
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Comment: Comment: How to construct a SummarizedExperiment object?
17 months ago James W. MacDonald 67k
0
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1
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924
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Comment: Comment: How to annotate mir4.1 arrays?
17 months ago James W. MacDonald 67k
1
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1
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924
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Answer: Answer: How to annotate mir4.1 arrays?
17 months ago James W. MacDonald 67k
1
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0
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1.6k
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Answer: Answer: How to combine a bulk and pseudobulk dataset?
17 months ago James W. MacDonald 67k
1
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1
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2.6k
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Answer: Answer: Errors with DiffBind, Error in if ((length(callers) == 1) & (callers[1] == "coun
17 months ago James W. MacDonald 67k
0
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1
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909
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Answer: Answer: DESeq: low p-values for genes with zero counts in all but one sample of the comp
17 months ago James W. MacDonald 67k
1
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1
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1.9k
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Answer: Answer: How to construct a SummarizedExperiment object?
17 months ago James W. MacDonald 67k
0
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1
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1.1k
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Answer: Answer: Error in H5Fopen
17 months ago James W. MacDonald 67k
0
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1
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2.5k
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Comment: Comment: Problem at champ.load
17 months ago James W. MacDonald 67k
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0
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1.2k
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Comment: Comment: calculate distance to a certain sequence in one gene
17 months ago James W. MacDonald 67k
0
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1
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1.3k
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Answer: Answer: Error in loading file using champ.load() from ChAMP package
17 months ago James W. MacDonald 67k
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0
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1.1k
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Answer: Answer: In .local(object, test.stat, ...) : No enrichment can pe performed - there are
17 months ago James W. MacDonald 67k
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0
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1.1k
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Comment: Comment: How to annotate genes from results of DiffBind
17 months ago James W. MacDonald 67k
8,581 results • Page 17 of 172
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