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Answer: Answer: Microarray Limma Model fitting and DEG
7 weeks ago James W. MacDonald 65k
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239
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Answer: Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
7 weeks ago James W. MacDonald 65k
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0
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191
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Answer: Answer: bioconductor emailing list
7 weeks ago James W. MacDonald 65k
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235
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Answer: Answer: How to extract counts from a DESeq dataset ordered by a specific sample?
7 weeks ago James W. MacDonald 65k
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481
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Answer: Answer: Batch Effect Correction, Gene Filtering
8 weeks ago James W. MacDonald 65k
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243
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Answer: Answer: Non-empty droplets versus good quality cells
8 weeks ago James W. MacDonald 65k
4
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256
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Answer: Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
8 weeks ago James W. MacDonald 65k
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290
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Answer: Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
8 weeks ago James W. MacDonald 65k
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412
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Answer: Answer: Unable to annotate ExpressionSet object from hugene11st chip
8 weeks ago James W. MacDonald 65k
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250
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Answer: Answer: Perfoming clumping using ieugwasr package
9 weeks ago James W. MacDonald 65k
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183
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Answer: Answer: problem with ClusterRepro function
9 weeks ago James W. MacDonald 65k
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289
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Answer: Answer: Error in classify_gene_pairs
9 weeks ago James W. MacDonald 65k
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162
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Answer: Answer: Is random access by row index possible for an indexed VCF file?
9 weeks ago James W. MacDonald 65k
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278
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Answer: Answer: supportedOrganisms() in goseq producing Error in names(trackIds)
10 weeks ago James W. MacDonald 65k
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0
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199
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Answer: Answer: Error with BSgenome, wanting to analyse non-model species with ATACseqQC
10 weeks ago James W. MacDonald 65k
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2
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456
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Answer: Answer: DESeq and SVA for batch effect
10 weeks ago James W. MacDonald 65k
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382
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Answer: Answer: Factor vs Character in design
10 weeks ago James W. MacDonald 65k
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183
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Answer: Answer: error in Matrix function
11 weeks ago James W. MacDonald 65k
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1
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320
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Answer: Answer: Would I treat surrogate variables as batches?
11 weeks ago James W. MacDonald 65k
2
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504
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Answer: Answer: DGE analysis with LIMMA
11 weeks ago James W. MacDonald 65k
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261
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Answer: Answer: Changed DESeq2 comparison value but the heatmap is still the same
11 weeks ago James W. MacDonald 65k
3
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476
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Answer: Answer: Estimating Cell Counts for EPIC V2 array data
11 weeks ago James W. MacDonald 65k
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0
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375
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Answer: Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
11 weeks ago James W. MacDonald 65k
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0
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194
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Answer: Answer: Matrix multiplication error to estimate telomere length
11 weeks ago James W. MacDonald 65k
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292
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Answer: Answer: impute.knn produces different results based on matrix order
11 weeks ago James W. MacDonald 65k
1
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2
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473
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Answer: Answer: "could not find function "readTSGE" in package ctsGE" Error occurs when trying t
11 weeks ago James W. MacDonald 65k
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345
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Answer: Answer: Error in featureCounts matrix
11 weeks ago James W. MacDonald 65k
1
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0
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334
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Answer: Answer: locfunc not found in DESeq2
12 weeks ago James W. MacDonald 65k
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1
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435
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Answer: Answer: Comparing gene expression across three tissue types to identify any difference.
12 weeks ago James W. MacDonald 65k
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0
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341
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Answer: Answer: Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
12 weeks ago James W. MacDonald 65k
1
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0
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299
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Answer: Answer: Mapping LOC genes between species using Orthology.eg.db (or a similar tool)
12 weeks ago James W. MacDonald 65k
0
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1
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478
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Answer: Answer: Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
12 weeks ago James W. MacDonald 65k
1
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1
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377
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Answer: Answer: frma normalization
3 months ago James W. MacDonald 65k
2
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0
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278
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Answer: Answer: Error in enrichKEGG for a model organism
3 months ago James W. MacDonald 65k
1
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0
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213
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Answer: Answer: Clsuter Profiler "counts"
3 months ago James W. MacDonald 65k
0
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0
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187
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Answer: Answer: error with spatialDE::run() and basilisk i/f
3 months ago James W. MacDonald 65k
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1
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495
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Answer: Answer: error in reading idat files and creating rgset
3 months ago James W. MacDonald 65k
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0
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247
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Answer: Answer: Canonical transcripts Mus musculus
3 months ago James W. MacDonald 65k
0
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1
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401
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Answer: Answer: Biplot has a secondary x-axis and y-axis
3 months ago James W. MacDonald 65k
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1
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641
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Answer: Answer: How do you post on this forum?
3 months ago James W. MacDonald 65k
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1
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394
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Answer: Answer: limma with interaction term
3 months ago James W. MacDonald 65k
0
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0
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215
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Answer: Answer: GC content track on GVIZ
3 months ago James W. MacDonald 65k
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0
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361
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Answer: Answer: seqlevelsStyle() not working
3 months ago James W. MacDonald 65k
0
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0
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9.5k
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Answer: Answer: How to find rsID with biomaRt in R
3 months ago James W. MacDonald 65k
0
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1
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532
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Answer: Answer: Help with DESeq results to pathways with the fgsea package
3 months ago James W. MacDonald 65k
2
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1
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353
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Answer: Answer: ComplexHeatmap crashing R session
3 months ago James W. MacDonald 65k
1
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1
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386
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Answer: Answer: TMM normalization after RUVg correction
3 months ago James W. MacDonald 65k
2
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0
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292
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Answer: Answer: Need Help w/ Subset on GRangesList
3 months ago James W. MacDonald 65k
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1
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419
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Answer: Answer: LOG2FC DESEQ2
3 months ago James W. MacDonald 65k
1
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1
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445
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Answer: Answer: DEXSeq: summarizeOverlaps() crashes Rstudio with too many samples
3 months ago James W. MacDonald 65k
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