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1
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564
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Answer:
Answer: Microarray Limma Model fitting and DEG
7 weeks ago
James W. MacDonald
65k
1
vote
1
reply
239
views
Answer:
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
7 weeks ago
James W. MacDonald
65k
0
votes
0
replies
191
views
Answer:
Answer: bioconductor emailing list
7 weeks ago
James W. MacDonald
65k
1
vote
1
reply
236
views
Answer:
Answer: How to extract counts from a DESeq dataset ordered by a specific sample?
7 weeks ago
James W. MacDonald
65k
2
votes
1
reply
481
views
Answer:
Answer: Batch Effect Correction, Gene Filtering
8 weeks ago
James W. MacDonald
65k
0
votes
0
replies
247
views
Answer:
Answer: Non-empty droplets versus good quality cells
8 weeks ago
James W. MacDonald
65k
4
votes
2
replies
257
views
Answer:
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
8 weeks ago
James W. MacDonald
65k
2
votes
1
reply
293
views
Answer:
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
8 weeks ago
James W. MacDonald
65k
0
votes
1
reply
412
views
Answer:
Answer: Unable to annotate ExpressionSet object from hugene11st chip
8 weeks ago
James W. MacDonald
65k
0
votes
0
replies
251
views
Answer:
Answer: Perfoming clumping using ieugwasr package
9 weeks ago
James W. MacDonald
65k
0
votes
0
replies
184
views
Answer:
Answer: problem with ClusterRepro function
9 weeks ago
James W. MacDonald
65k
0
votes
1
reply
289
views
Answer:
Answer: Error in classify_gene_pairs
9 weeks ago
James W. MacDonald
65k
0
votes
0
replies
164
views
Answer:
Answer: Is random access by row index possible for an indexed VCF file?
9 weeks ago
James W. MacDonald
65k
1
vote
1
reply
278
views
Answer:
Answer: supportedOrganisms() in goseq producing Error in names(trackIds)
10 weeks ago
James W. MacDonald
65k
1
vote
0
replies
199
views
Answer:
Answer: Error with BSgenome, wanting to analyse non-model species with ATACseqQC
10 weeks ago
James W. MacDonald
65k
0
votes
2
replies
456
views
Answer:
Answer: DESeq and SVA for batch effect
10 weeks ago
James W. MacDonald
65k
1
vote
1
reply
382
views
Answer:
Answer: Factor vs Character in design
10 weeks ago
James W. MacDonald
65k
0
votes
0
replies
183
views
Answer:
Answer: error in Matrix function
11 weeks ago
James W. MacDonald
65k
0
votes
1
reply
320
views
Answer:
Answer: Would I treat surrogate variables as batches?
11 weeks ago
James W. MacDonald
65k
2
votes
1
reply
504
views
Answer:
Answer: DGE analysis with LIMMA
11 weeks ago
James W. MacDonald
65k
0
votes
0
replies
261
views
Answer:
Answer: Changed DESeq2 comparison value but the heatmap is still the same
11 weeks ago
James W. MacDonald
65k
3
votes
1
reply
477
views
Answer:
Answer: Estimating Cell Counts for EPIC V2 array data
11 weeks ago
James W. MacDonald
65k
2
votes
0
replies
375
views
Answer:
Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
11 weeks ago
James W. MacDonald
65k
0
votes
0
replies
195
views
Answer:
Answer: Matrix multiplication error to estimate telomere length
11 weeks ago
James W. MacDonald
65k
0
votes
1
reply
292
views
Answer:
Answer: impute.knn produces different results based on matrix order
11 weeks ago
James W. MacDonald
65k
1
vote
2
replies
474
views
Answer:
Answer: "could not find function "readTSGE" in package ctsGE" Error occurs when trying t
11 weeks ago
James W. MacDonald
65k
0
votes
0
replies
346
views
Answer:
Answer: Error in featureCounts matrix
11 weeks ago
James W. MacDonald
65k
1
vote
0
replies
334
views
Answer:
Answer: locfunc not found in DESeq2
12 weeks ago
James W. MacDonald
65k
1
vote
1
reply
435
views
Answer:
Answer: Comparing gene expression across three tissue types to identify any difference.
12 weeks ago
James W. MacDonald
65k
1
vote
0
replies
342
views
Answer:
Answer: Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
12 weeks ago
James W. MacDonald
65k
1
vote
0
replies
299
views
Answer:
Answer: Mapping LOC genes between species using Orthology.eg.db (or a similar tool)
12 weeks ago
James W. MacDonald
65k
0
votes
1
reply
479
views
Answer:
Answer: Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
12 weeks ago
James W. MacDonald
65k
1
vote
1
reply
378
views
Answer:
Answer: frma normalization
3 months ago
James W. MacDonald
65k
2
votes
0
replies
278
views
Answer:
Answer: Error in enrichKEGG for a model organism
3 months ago
James W. MacDonald
65k
1
vote
0
replies
213
views
Answer:
Answer: Clsuter Profiler "counts"
3 months ago
James W. MacDonald
65k
0
votes
0
replies
188
views
Answer:
Answer: error with spatialDE::run() and basilisk i/f
3 months ago
James W. MacDonald
65k
0
votes
1
reply
495
views
Answer:
Answer: error in reading idat files and creating rgset
3 months ago
James W. MacDonald
65k
0
votes
0
replies
247
views
Answer:
Answer: Canonical transcripts Mus musculus
3 months ago
James W. MacDonald
65k
0
votes
1
reply
401
views
Answer:
Answer: Biplot has a secondary x-axis and y-axis
3 months ago
James W. MacDonald
65k
0
votes
1
reply
642
views
Answer:
Answer: How do you post on this forum?
3 months ago
James W. MacDonald
65k
0
votes
1
reply
394
views
Answer:
Answer: limma with interaction term
3 months ago
James W. MacDonald
65k
0
votes
0
replies
215
views
Answer:
Answer: GC content track on GVIZ
3 months ago
James W. MacDonald
65k
0
votes
0
replies
361
views
Answer:
Answer: seqlevelsStyle() not working
3 months ago
James W. MacDonald
65k
0
votes
0
replies
9.5k
views
Answer:
Answer: How to find rsID with biomaRt in R
3 months ago
James W. MacDonald
65k
0
votes
1
reply
532
views
Answer:
Answer: Help with DESeq results to pathways with the fgsea package
3 months ago
James W. MacDonald
65k
2
votes
1
reply
353
views
Answer:
Answer: ComplexHeatmap crashing R session
3 months ago
James W. MacDonald
65k
1
vote
1
reply
387
views
Answer:
Answer: TMM normalization after RUVg correction
3 months ago
James W. MacDonald
65k
2
votes
0
replies
292
views
Answer:
Answer: Need Help w/ Subset on GRangesList
3 months ago
James W. MacDonald
65k
0
votes
1
reply
420
views
Answer:
Answer: LOG2FC DESEQ2
3 months ago
James W. MacDonald
65k
1
vote
1
reply
445
views
Answer:
Answer: DEXSeq: summarizeOverlaps() crashes Rstudio with too many samples
3 months ago
James W. MacDonald
65k
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