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Created A Post With More Than 5 Votes
Awarded 394 times (see all awards). Earned by the
following contributors:
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Confidence intervals on edgeR logFC
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Fit a multinomial to RNA-seq count data
4 years, 1 month ago
United States
A: All same padj of contrast results in the DESeq2
4 years, 1 month ago
United States
A: DESeq2 lfcShrink() usage of coef vs. usage of contrast
4 years, 1 month ago
United States
A: Using 'tximport' library for downstream DGE after quantifying with Kallisto
4 years, 1 month ago
United States
A: Deseq2: RNA-seq and Negative binomial distribution
4 years, 1 month ago
United States
A: DESeq2 - Acquiring batch-corrected values for PCA and hierarchical clustering
4 years, 1 month ago
United States
A: difference among tximport scaledTPM, lengthScaledTPM and the original TPM output
4 years, 1 month ago
United States
A: DESeq2: add annotations (from data frame) to DESeqDataSet
4 years, 1 month ago
United States
Answer: DESeq2 and shrinkage of log2 fold changes
4 years, 1 month ago
United States
A: How does DESeq2 handle zero counts in one condition?
4 years, 1 month ago
United States
A: Pre-processing of RNA-Seq data for WGCNA and DGE
4 years, 1 month ago
United States
A: DESeq2: multiple conditions design -- How to select subset comparisons from the
4 years, 1 month ago
United States
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
4 years, 1 month ago
United States
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
4 years, 1 month ago
United States
A: [DESeq2] time series strain-specific differences over time
4 years, 1 month ago
Seattle, WA, United States
A: annotatePeak() in ChIPseeker - how long does it take to run?
4 years, 1 month ago
Seattle, WA, United States
A: resize (shrink/expand) GenomicRanges
4 years, 1 month ago
Seattle, WA, United States
A: GenomicAlignments: Inverting strand when counting using summarizeOverlaps
4 years, 1 month ago
Seattle, WA, United States
A: how to extract "Gene type" from org.Mm.eg.db?
4 years, 1 month ago
The city by the bay
A: Using limma when continuous and categorical confounders are present at the same
4 years, 1 month ago
The city by the bay
A: limma Time Course Experiment with many time points
4 years, 1 month ago
The city by the bay
A: Correct sequence of functions for edgeR, edgeR robust and edgeR QL.
4 years, 1 month ago
The city by the bay
A: Allele Specific Expression in DESeq2 or EdgeR
4 years, 1 month ago
The city by the bay
A: How to determine which edgeR glmFit and glmQLFit are better
4 years, 1 month ago
The city by the bay
A: Is Limma's removeBatchEffect() and log2() commutative?
4 years, 1 month ago
The city by the bay
A: Downstream analysis after using mnnCorrect()
4 years, 1 month ago
The city by the bay
A: DE for genes with very low counts using limma.
4 years, 1 month ago
The city by the bay
A: Adjust for multiple batches using combat
4 years, 1 month ago
The city by the bay
A: LogFC: how do you determine the cutoff for differentially expressed genes?
4 years, 1 month ago
The city by the bay
A: Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
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