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following contributors:
8 years, 1 month ago
WEHI, Melbourne, Australia
A: When doing differential gene analysis, why measuring genes based on exons? Can w
8 years, 1 month ago
WEHI, Melbourne, Australia
A: Error in plot.new() : figure margins too large
8 years, 1 month ago
WEHI, Melbourne, Australia
A: Limma: Best way to analyse treatment response in patients paired pre/post treatm
8 years, 1 month ago
WEHI, Melbourne, Australia
A: Error in plot.new() : figure margins too large
8 years, 1 month ago
WEHI, Melbourne, Australia
A: Differential expression analysis desgin
8 years, 2 months ago
WEHI, Melbourne, Australia
A: plotMDS axis labels for limma/EdgeR: PCA or PCoA
8 years, 3 months ago
WEHI, Melbourne, Australia
A: edgeR : How to test differential exon usage on case/control study across all tim
8 years, 4 months ago
WEHI, Melbourne, Australia
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
8 years, 5 months ago
WEHI, Melbourne, Australia
Limma - how to manage huge differences in library sizes
8 years, 5 months ago
WEHI, Melbourne, Australia
Different logFC (log2foldchange) values for genes from limma-voom and other tools (edgeR and DESeq2)
8 years, 5 months ago
WEHI, Melbourne, Australia
how to use "non-standard" species for KEGG / GO analysis in limma?
8 years, 5 months ago
WEHI, Melbourne, Australia
Question about genas function in the limma package
8 years, 5 months ago
WEHI, Melbourne, Australia
Problem obtaining standard error from limma
8 years, 5 months ago
WEHI, Melbourne, Australia
background correction for illumina array files
8 years, 5 months ago
WEHI, Melbourne, Australia
seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
8 years, 5 months ago
WEHI, Melbourne, Australia
Confusing: identify differentially expression genes (DEG) perturbed by a drug in Limma
8 years, 5 months ago
WEHI, Melbourne, Australia
limma-trend with random effects and/or array weights
8 years, 5 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
8 years, 5 months ago
WEHI, Melbourne, Australia
goana limma- extract list of DE genes and genes in the enriched GO terms?
8 years, 5 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 5 months ago
WEHI, Melbourne, Australia
Reading in delta Ct values using HTqPCR
8 years, 5 months ago
WEHI, Melbourne, Australia
Where is it possible to find gene sets in rdata format for GSEA ?
8 years, 5 months ago
WEHI, Melbourne, Australia
Representative gene expression value in one condition with several replicates
8 years, 5 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
8 years, 5 months ago
WEHI, Melbourne, Australia
Finding genes respond differently to treatment between many genotype comparison
8 years, 5 months ago
WEHI, Melbourne, Australia
Performing differential gene analysis on RT PCR experimental data
8 years, 5 months ago
WEHI, Melbourne, Australia
limma decideTests: only p-value less than (but not equal to) alpha are flagged as significant
8 years, 5 months ago
WEHI, Melbourne, Australia
unusal expression level values after normalization in Affymetrix microarray experiment
8 years, 5 months ago
WEHI, Melbourne, Australia
Combining data from multiple illumina microarray experiments
8 years, 5 months ago
WEHI, Melbourne, Australia
Should I adjust my q-values in edgeR/DESeq2 in my example?
8 years, 5 months ago
WEHI, Melbourne, Australia
GenomicAlignments is too slow with summarizeOverlaps
8 years, 5 months ago
WEHI, Melbourne, Australia
about model.matrix in limma or edgeR
8 years, 5 months ago
WEHI, Melbourne, Australia
Difference between glmQLFTest and glmTreat in the EdgeR package
8 years, 5 months ago
WEHI, Melbourne, Australia
Getting genes list associated to current GO terms
8 years, 5 months ago
WEHI, Melbourne, Australia
When doing differential gene analysis, why measuring genes based on exons? Can we measure genes based on CDS?
8 years, 5 months ago
WEHI, Melbourne, Australia
Microarray analysis using RMA method using affy, limma
8 years, 5 months ago
WEHI, Melbourne, Australia
Removing continuous covariate effects in limma analysis
8 years, 5 months ago
WEHI, Melbourne, Australia
How to get 'previous symbols'? is there HGNC Mart connection?
8 years, 5 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
8 years, 5 months ago
WEHI, Melbourne, Australia
Where is the source code for qAbundanceDist?
8 years, 5 months ago
WEHI, Melbourne, Australia
Fit a multinomial to RNA-seq count data
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