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following contributors:
3 months, 2 weeks ago
United States
Answer: What is the importance of `--countReadPairs` in featureCounts on paired end data
4 months, 2 weeks ago
United States
Answer: Limma comparing gene expression between base line and one treatment
4 months, 3 weeks ago
United States
Answer: findOverlaps(), queryHits and subjectHits()
8 months, 3 weeks ago
United States
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
9 months, 1 week ago
United States
Answer: Estimating Cell Counts for EPIC V2 array data
10 months, 3 weeks ago
United States
Answer: Enrichement with clusterProfiler and biomart
11 months, 4 weeks ago
United States
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
1 year ago
United States
Answer: Conversion between different types of bioinformatic forms. (eg. NCBI protein to
1 year, 4 months ago
United States
Answer: error message when I use the bsseq read.bismark command to read a genome wide cy
1 year, 8 months ago
United States
Answer: minfi support of illumina Infinium methylationEPIC v2.0
1 year, 9 months ago
United States
Answer: how to extract and match information of two filein R
1 year, 10 months ago
United States
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
1 year, 10 months ago
United States
Answer: Flank GenomicRanges on Both Sides
2 years ago
United States
Answer: Too many differentially expressed miRNA with limma
2 years, 1 month ago
United States
Answer: Problem obtaining NCBI gene IDs from Ensembl version 107
2 years, 2 months ago
United States
Answer: karyoploteR genome coverage plotting using BSgenome.TAIR10
2 years, 4 months ago
United States
Answer: Convert an R data.frame to a bed file in R
2 years, 5 months ago
United States
Answer: Confused about the CPM and TMM normalization in edgeR
2 years, 6 months ago
United States
Answer: how to color specific node or gene symbol from cnetplot ?
2 years, 7 months ago
United States
Answer: Normalization of IDAT files from Illumina HumanMethylation450 BeadChip without .
2 years, 8 months ago
United States
Answer: Why does BSgenome contain more chromosomes of human and mouse species then they
2 years, 9 months ago
United States
Answer: GO term gene ontology enrichment analysis
2 years, 10 months ago
United States
Answer: Updating org.Sc.sgd.db, and integration with topGO
2 years, 10 months ago
United States
Answer: Limma/voom analysis of time-series data (with only 1 condition)
2 years, 10 months ago
United States
Answer: Although I successfully installed the package "simpleaffy'' , I cannot library i
2 years, 11 months ago
United States
Answer: Start to End RNA-Seq with R Bioconductor
3 years ago
United States
Answer: Coding Style for BioC Package submissions: camelCaps or snake_case?
3 years, 1 month ago
United States
Answer: biomaRt error: database disk image is malformed
3 years, 5 months ago
United States
Answer: R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" genera
3 years, 6 months ago
United States
Answer: How to run getSeq() on a GRanges object with invalid DNA letters?
3 years, 6 months ago
United States
Answer: Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve
3 years, 9 months ago
United States
Answer: Limma outputs different results for same sample?
3 years, 11 months ago
United States
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
3 years, 11 months ago
United States
Answer: Checking/updating package versions
4 years ago
United States
Answer: se does not inherit from class SummarizedExperiment
4 years, 1 month ago
United States
Answer: Paired Time course Experiment Design on edgeR between and within groups
4 years, 2 months ago
United States
A: How to add colors to the PCA made using SNPRelate
4 years, 2 months ago
United States
A: RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
4 years, 2 months ago
United States
A: Building an HDF5Array/DelayedArray object incrementally
4 years, 3 months ago
United States
A: Is the ExpressionSet Class Deprecated?
4 years, 6 months ago
United States
A: Limma multi-group analysis - General F-test
4 years, 7 months ago
United States
A: The Mac version of R always reports an error when installing WGCNA
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