> source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.2 (BiocInstaller 1.20.3), ?biocLite for help
A new version of Bioconductor is available after installing the most recent
version of R; see http://bioconductor.org/install
> biocLite("supraHex")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.2 (BiocInstaller 1.20.3), R 3.2.3 (2015-12-10).
Installing package(s) ‘supraHex’
also installing the dependencies ‘nlme’, ‘hexbin’, ‘ape’
trying URL 'https://cran.rstudio.com/src/contrib/nlme_3.1-131.tar.gz'
Content type 'application/x-gzip' length 780607 bytes (762 KB)
==================================================
downloaded 762 KB
trying URL 'https://cran.rstudio.com/src/contrib/hexbin_1.27.1.tar.gz'
Content type 'application/x-gzip' length 550360 bytes (537 KB)
==================================================
downloaded 537 KB
trying URL 'https://cran.rstudio.com/src/contrib/ape_4.1.tar.gz'
Content type 'application/x-gzip' length 771308 bytes (753 KB)
==================================================
downloaded 753 KB
trying URL 'https://bioconductor.org/packages/3.2/bioc/src/contrib/supraHex_1.8.0.tar.gz'
Content type 'application/x-gzip' length 6053261 bytes (5.8 MB)
==================================================
downloaded 5.8 MB
* installing *source* package ‘nlme’ ...
** package ‘nlme’ successfully unpacked and MD5 sums checked
** libs
gfortran -fpic -g -O2 -fstack-protector-strong -c chol.f -o chol.o
/bin/bash: gfortran: command not found
/usr/lib/R/etc/Makeconf:157: recipe for target 'chol.o' failed
make: *** [chol.o] Error 127
ERROR: compilation failed for package ‘nlme’
* removing ‘/home/agneet42/R/x86_64-pc-linux-gnu-library/3.2/nlme’
* installing *source* package ‘hexbin’ ...
** package ‘hexbin’ successfully unpacked and MD5 sums checked
** libs
gfortran -fpic -g -O2 -fstack-protector-strong -c hbin.f -o hbin.o
/bin/bash: gfortran: command not found
/usr/lib/R/etc/Makeconf:157: recipe for target 'hbin.o' failed
make: *** [hbin.o] Error 127
ERROR: compilation failed for package ‘hexbin’
* removing ‘/home/agneet42/R/x86_64-pc-linux-gnu-library/3.2/hexbin’
ERROR: dependency ‘nlme’ is not available for package ‘ape’
* removing ‘/home/agneet42/R/x86_64-pc-linux-gnu-library/3.2/ape’
ERROR: dependencies ‘hexbin’, ‘ape’ are not available for package ‘supraHex’
* removing ‘/home/agneet42/R/x86_64-pc-linux-gnu-library/3.2/supraHex’
The downloaded source packages are in
‘/tmp/RtmpCs4obw/downloaded_packages’
Old packages: 'backports', 'BH', 'boot', 'checkmate', 'crayon', 'curl', 'DBI',
'devtools', 'doParallel', 'dplyr', 'evaluate', 'foreign', 'Formula', 'gdata',
'git2r', 'gmm', 'gridExtra', 'HSAUR2', 'htmlwidgets', 'httpuv', 'httr',
'jsonlite', 'knitr', 'Lahman', 'openssl', 'purrr', 'R6', 'Rcpp', 'rlang',
'rmarkdown', 'RSQLite', 'rstudioapi', 'Rvmmin', 'sandwich', 'scales',
'shiny', 'shinyjs', 'tibble', 'tidyr', 'withr', 'igraph', 'lattice', 'Matrix'
Update all/some/none? [a/s/n]: n
Warning messages:
1: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘nlme’ had non-zero exit status
2: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘hexbin’ had non-zero exit status
3: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘ape’ had non-zero exit status
4: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘supraHex’ had non-zero exit status
