Showing : hexbin • reset
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Issues while downloading supraHex package in Linux
supraHex nlme hexbin ape
updated 6.0 years ago by 25k • written 6.0 years ago by • 0
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biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC
updated 10.5 years ago by ★ 8.2k • written 10.5 years ago by ▴ 100
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CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 11.9 years ago by ▴ 430 • written 11.9 years ago by ▴ 10
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3
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Regarding hexbin in R...
hexbin hexbin
updated 14.2 years ago by ★ 6.0k • written 14.2 years ago by ▴ 20
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628
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Hexbin equivalents for xlim and yim
hexbin hexbin
15.2 years ago Gregory Warnes ▴ 20
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1
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1.7k
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hexbin + pairs
hexbin hexbin
updated 15.4 years ago by ▴ 220 • written 15.4 years ago by ▴ 20
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2
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1.6k
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hexbin package installation probs
hexbin arrayQuality hexbin arrayQuality
updated 16.1 years ago by 63k • written 16.1 years ago by ▴ 230
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Error with arrayQuality
Microarray Cancer hexbin limma marray convert Microarray Cancer hexbin limma marray
updated 16.2 years ago by ★ 7.4k • written 16.2 years ago by ▴ 50
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2fold sigchanges from limma
GO Survival hgu133a2 annotate hexbin limma gcrma matchprobes annaffy GO Survival hexbin
updated 16.8 years ago by 48k • written 16.8 years ago by ▴ 60
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977
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Newbie 'rflowcyt' question; problem loading facscan256.fcs
Survival Infrastructure Cancer hexbin prada rfcdmin rflowcyt Survival Infrastructure
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 80
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8
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3.0k
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Problem installing hexbin?
hexbin hexbin
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 30
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525
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[Fwd: Re: Problem installing hexbin?]
hexbin hexbin
17.4 years ago David Henderson ▴ 100
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3
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1.1k
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bugs in arrayQuality and marray
Normalization Biobase hexbin arrayQuality marray Normalization Biobase hexbin arrayQuality
17.8 years ago Paquet, Agnes ▴ 500
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4
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1.3k
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Problem compiling hexbin with gcc 4.0.2
hexbin hexbin
17.9 years ago David Henderson ▴ 100
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829
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hexbin in R 2.2.0 - installation problem
graph hexbin limma graph hexbin limma
17.9 years ago Nicholas Lewin-Koh ▴ 430
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4
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2.3k
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hexbin in R 2.2.0 - installation problem
graph hexbin graph hexbin
updated 17.9 years ago by ▴ 320 • written 18.0 years ago by ★ 6.0k
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6
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1.3k
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ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 18.0 years ago by ▴ 190 • written 18.0 years ago by ★ 7.4k
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Color space and pairs with hexbin panels
hexbin hexbin
18.2 years ago Nicholas Lewin-Koh ▴ 430
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5
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1.7k
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new hexbin + adding points to hexbin plots
hexbin hexbin
updated 18.2 years ago by ▴ 430 • written 18.2 years ago by ★ 6.0k
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pairs() with hexbin panels (was RE: hexbin needs colorspac e - but where is colorspace?)
hexbin hexbin
18.2 years ago Liaw, Andy ▴ 360
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969
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hexbin - xlim, ylim
hexbin hexbin
18.2 years ago Naomi Altman ★ 6.0k
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4
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1.2k
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hexbin needs colorspace - but where is colorspace?
hexbin hexbin
updated 18.2 years ago by ▴ 380 • written 18.2 years ago by ★ 6.0k
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859
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RE: maQualityPlots (qpHexbin) question
hexbin arrayQuality hexbin arrayQuality
18.3 years ago Paquet, Agnes ▴ 500
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730
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maQualityPlots (qpHexbin) question
hexbin arrayQuality hexbin arrayQuality
18.3 years ago Rob J Goedman ▴ 40
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4
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989
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reproducing dChip expression measure
hexbin hexbin
updated 18.5 years ago by ★ 6.0k • written 18.5 years ago by ★ 1.8k
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704
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hexbin 1.1-4 problem
hexbin hexbin
18.7 years ago Liviu M Vladutu ▴ 20
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4
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1.2k
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issue in arrayQuality package
hexbin arrayQuality hexbin arrayQuality
18.8 years ago Longsi Ran ▴ 30
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1
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763
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Re: problem with hexbin
hexbin hexbin
updated 18.8 years ago by ▴ 500 • written 18.8 years ago by ▴ 250
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1
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819
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problem with hexbin
hexbin marray hexbin marray
updated 18.8 years ago by ▴ 500 • written 18.8 years ago by ▴ 250
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770
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can't get release hexbin source package
GO hexbin arrayQuality GO hexbin arrayQuality
18.9 years ago Darlene Goldstein ▴ 230
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5
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1.1k
views
hexbin package 1.1-4
hexbin hexbin
updated 18.9 years ago by ▴ 430 • written 18.9 years ago by ▴ 80
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2
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1.4k
views
Problem installing graph package
Ruuid rhdf5 graph hexbin Rgraphviz Ruuid rhdf5 graph hexbin Rgraphviz
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by ▴ 50
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3
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probelms with hexbin (Solaris, R1.9, BioC 1.4)
hexbin hexbin
updated 19.0 years ago by ▴ 430 • written 19.0 years ago by ▴ 380
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1
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588
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version information
hexbin hexbin
updated 19.5 years ago by 63k • written 19.5 years ago by ▴ 50
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1
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991
views
lcex option not working?
hexbin hexbin
updated 19.8 years ago by ▴ 330 • written 19.8 years ago by ▴ 50
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486
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Re: hexbin bug and fix
hexbin hexbin
20.1 years ago Nicholas Lewin-Koh ▴ 430
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1
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996
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 20.3 years ago by ★ 2.9k • written 20.3 years ago by ▴ 130
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3
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Install problem of some BioConductor packages under linux R session
hexbin hexbin
updated 20.5 years ago by ★ 3.9k • written 20.5 years ago by ▴ 10
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RE: Bioconductor Digest, Vol 1, Issue 271
Normalization Preprocessing probe affy hexbin Normalization Preprocessing probe affy
20.5 years ago Huang, Cheng-Cheng NIH/NCI ▴ 30
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638
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Re: Bioconductor Digest, Vol 1, Issue 270
hexbin hexbin
20.5 years ago Nicholas Lewin-Koh ▴ 430
40 results • Page 1 of 1
Recent ...
Replies
Answer: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq by Michael Love 40k
Did you manually calculate RPMs? Try `fpm(dds)` for comparison, as this also uses DESeq2 median ratio scaling.
Comment: collapseReplicates error after tximeta by Michael Love 40k
A note: I've now changed collapseReplicates() to output a loud warning when it is run on a DESeqDataSet (SummarizedExperiment) with more th…
Comment: Suggested package missing from Development version of Bioconductor by shepherl 3.5k
Have you tried reaching out to the maintainers? If they do not fix the package it will remain unavailable and cause ERROR in your package.…
Answer: Batch effect adjust in model matrix by ATpoint ★ 3.4k
Each sample is a different day, that is called "nested", so there is nothing you can do here. Next time do a better experimental design, he…
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts? by Michael Love 40k
Oh, I see. If you can't use counts + offset then I prefer lengthScaledTPM to DESeq2, i.e. `txi$counts` to `DESeqDataSetFromMatrix()`. So …
Votes
Comment: Batch correction and repeated measures
batch effect : comBat or blocking in limma ?
Batch correction and repeated measures
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
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