Question: Installation with package versions?
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gravatar for A.J. Rossini
14.1 years ago by
A.J. Rossini210
A.J. Rossini210 wrote:
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ADD COMMENTlink modified 14.1 years ago by Seth Falcon7.4k • written 14.1 years ago by A.J. Rossini210
Answer: Installation with package versions?
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gravatar for Ariel Chernomoretz
14.1 years ago by
Ariel Chernomoretz380 wrote:
You may already know this one, but a workaround would be: download the source package 'package.tgz'and then from your shell prompt: R CMD INSTALL --with-package-versions package.tgz Ariel./ On September 6, 2005 04:17 am, A.J. Rossini wrote: > Is it possible to use the bioconductor install tools to install with > package versions? > (i.e. the equivalent of > install.packages(c("list","of","packages"),installWithVers=TRUE) > or > update.packages(ask=FALSE,installWithVers=TRUE) > ? ) > > best, > -tony > > "Commit early,commit often, and commit in a repository from which we can > easily > roll-back your mistakes" (AJR, 4Jan05). > > A.J. Rossini > blindglobe at gmail.com > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- Ariel Chernomoretz, Ph.D. Centre de recherche du CHUL 2705 Blv Laurier, bloc T-367 Sainte-Foy, Qc G1V 4G2 (418)-525-4444 ext 46339
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Answer: Installation with package versions?
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gravatar for Seth Falcon
14.1 years ago by
Seth Falcon7.4k
Seth Falcon7.4k wrote:
On 6 Sep 2005, blindglobe at gmail.com wrote: > Is it possible to use the bioconductor install tools to install with > package versions? (i.e. the equivalent of > install.packages(c("list","of","packages"),installWithVers=TRUE) or > update.packages(ask=FALSE,installWithVers=TRUE) ? ) This _should_ work for new installation because extra args are passed to install.packages. So I would expect the following to do what you want: source("http://bioconductor.org/biocLite.R") biocLite("somePackage", installWithVers=TRUE) Let me know if you try this and it doesn't work. We don't have automated tools to deal with updating BioC packages at this time and so no way to installWithVer :-) Should this be considered for a default? + seth
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