I have successfully installed the SRAdb package. I am now trying to download and uncompress the files,
sqlfile <- 'SRAmetadb.sqlite' if(!file.exists('SRAmetadb.sqlite')) sqlfile <<- getSRAdbFile()
But I get the following error:
downloaded 0 bytes Error in download.file(url_sra, destfile = localfile, mode = "wb", method = method) : cannot download all files
I have looked up this error but came up with nothing, could you help me find out what the problem is? Thank you!
> traceback() 2: download.file(url_sra, destfile = localfile, mode = "wb", method = method) 1: getSRAdbFile() > sessionInfo() R version 3.3.3 (2017-03-06) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X El Capitan 10.11.6 locale:  en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8 attached base packages:  parallel stats graphics grDevices utils datasets methods base other attached packages:  SRAdb_1.32.0 RCurl_1.95-4.8 bitops_1.0-6 graph_1.52.0 BiocGenerics_0.20.0 RSQLite_1.1-2 loaded via a namespace (and not attached):  Rcpp_0.12.12 XML_3.98-1.5 digest_0.6.12 R6_2.2.2 DBI_0.5-1 stats4_3.3.3 httr_1.2.1 tools_3.3.3 Biobase_2.34.0  memoise_1.0.0 GEOquery_2.40.0