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sradb
•
reset
0
votes
2
replies
517
views
getSRAdbFile() does not work
SRAdb
GEOmetadb
9 months ago • updated 8 months ago
jfertaj
▴ 30
0
votes
0
replies
386
views
Best straightforward way from SRA-fastq to Phyloseq Object
SRAdb
21 months ago
Davide
• 0
7
votes
5
replies
5.0k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 8.0 years ago by
Sean Davis
21k
0
votes
3
replies
672
views
getSRA() from the SRAdb package is returning an empty data.frame from the full SQL file, but not the demo file
SRAdb
getSRA()
updated 2.7 years ago by
James W. MacDonald
62k • written 2.7 years ago by
mac54
• 0
0
votes
0
replies
742
views
listSRAfile: Error in if (is.na(sra_acc$run[i])) { : argument is of length zero
SRAdb
3.0 years ago
Aditya
▴ 160
0
votes
0
replies
683
views
Query based on PMIDs
SRAdb
geoquery
4.5 years ago
Deepak Tanwar
▴ 10
2
votes
0
replies
819
views
Discrepancies between sradb, sraruninfo
sradb
5.0 years ago
langmea
▴ 20
1
vote
3
replies
2.7k
views
SRAdb: Error downloading sqlite files
sradb
written 5.6 years ago by
arielle
• 0
1
vote
3
replies
1.4k
views
problem with getSRAfile in SRAdb
SRAdb
updated 5.6 years ago by
Jack Zhu
▴ 170 • written 5.6 years ago by
shidaxia
• 0
0
votes
8
replies
2.9k
views
error in SRAdb
SRAdb
SRAdb
updated 5.7 years ago by
djlemas
• 0 • written 8.9 years ago by
Faryabi, Robert NIH/NCI [F]
▴ 30
2
votes
1
reply
962
views
Uniting SRA Data into a single file
R
fastq
SRA
sradb
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
grecoandreauni
• 0
0
votes
1
reply
1.4k
views
Empty SQL query result for SRA run
sradb
6.6 years ago
Thomas Sandmann
▴ 80
0
votes
2
replies
1.1k
views
SRAdb "outdated" sqlite db
sradb
sqlite
outdated
updated 6.7 years ago by
Sean Davis
21k • written 6.7 years ago by
Nicolas Delhomme
▴ 320
0
votes
1
reply
1.6k
views
Error downloading using SRAdb
fastq
sradb
ftp
updated 7.2 years ago by
Jack Zhu
▴ 170 • written 7.2 years ago by
yugi1001
• 0
2
votes
2
replies
1.6k
views
SRAdb: could not find function "sqliteTableFields"
sradb
sqlite
updated 8.6 years ago by
Sean Davis
21k • written 8.6 years ago by
dario.beraldi
• 0
0
votes
1
reply
1.0k
views
Analysis of Next Generation of Sequencing DAta
SRAdb
updated 8.6 years ago by
Sean Davis
21k • written 8.6 years ago by
Jerry Cholo
▴ 190
0
votes
0
replies
1.1k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
9.0 years ago
Hugh Shanahan
▴ 50
0
votes
2
replies
1.3k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
updated 9.0 years ago by
Jack Zhu
▴ 170 • written 9.0 years ago by
Al-Nasir, Jamie 2012
▴ 10
0
votes
0
replies
1.9k
views
SRAdb package - problems
Genetics
SRAdb
Genetics
SRAdb
10.0 years ago
Jack Zhu
▴ 170
0
votes
0
replies
1.3k
views
Is it possible to get SRA sample attributes for a given sample or experiment ID?
SRAdb
SRAdb
10.2 years ago
Vladimir Morozov
▴ 130
0
votes
2
replies
1.8k
views
getSRAdbFile cannot open URL
SRAdb
SRAdb
updated 10.7 years ago by
Martin Morgan
25k • written 10.7 years ago by
Nicholas Stong
▴ 10
0
votes
0
replies
1.0k
views
SRAdb: differences between the database and the NCBI website
PROcess
SRAdb
PROcess
SRAdb
10.9 years ago
Ben Woodcroft
▴ 40
0
votes
1
reply
1.1k
views
SRAdb: is the database missing some entries? (Ben Woodcroft)
SRAdb
SRAdb
updated 10.9 years ago by
Ben Woodcroft
▴ 40 • written 10.9 years ago by
Jack Zhu
▴ 170
0
votes
0
replies
1.1k
views
Cevap: Re: SRAdb error
SRAdb
SRAdb
11.2 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.5k
views
SRAdb error
SRAdb
SRAdb
updated 11.2 years ago by
Sean Davis
21k • written 11.2 years ago by
Ayten YIGITER
▴ 10
0
votes
0
replies
1.3k
views
Bioconductor Digest, Vol 95, Issue 7
PROcess
SRAdb
PROcess
SRAdb
12.4 years ago
Jack Zhu
▴ 170
0
votes
2
replies
1.1k
views
SRAdb listFastq error
SRAdb
SRAdb
updated 12.4 years ago by
Sean Davis
21k • written 12.4 years ago by
Mark Dunning
★ 1.1k
0
votes
8
replies
1.7k
views
'SRAdb useful for visualizing BAM files'
SRAdb
SRAdb
updated 13.1 years ago by
Jack Zhu
▴ 170 • written 13.1 years ago by
Paul Shannon
★ 1.1k
28 results • Page
1 of 1
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Comment: BiocGenerics binary is outdated for macOS ARM
by
jennifer.wokaty
▴ 60
Thanks, Mike, for posting about this and thanks to Lori for noticing the lock. I removed it and RProtoBufLib passes R CMD check. Unfortunat…
Comment: BiocGenerics binary is outdated for macOS ARM
by
Michael Steinbaugh
▴ 90
Ah thanks for the update. Yeah I see that the flowClust release is the culprit: https://www.bioconductor.org/packages/release/bioc/html/flo…
Comment: Submitting BSgenome package for a new assembly
by
Manish
• 0
Thanks for the info. This is very helpful. -Manish
Comment: Merge 2 accounts, or delete 1 account.
by
shepherl
3.5k
are you talking specifically on the support site or elsewhere also?
Comment: BiocGenerics binary is outdated for macOS ARM
by
shepherl
3.5k
That is because it is failing from dependencies not being available. https://bioconductor.org/checkResults/3.17/bioc-mac-arm64-LATEST/BiocG…
Votes
flowCore: using read.FCS with which.lines is not time efficient?
Comment: BiocGenerics binary is outdated for macOS ARM
Comment: Submitting BSgenome package for a new assembly
How to create "trait data" file for WGCNA
Comment: Visualization of negative log CPM values
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