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Answer: Error in makeTxDbFromGFF(txomeInfo$gtf)
by
Michael Love
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I see that tximeta found a linked transcriptome. Can you show this part of your code as well? How did you create the `linkedTxome`?
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Gordon Smyth
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You need to start by doing an ordinary paired analysis.
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Michael Love
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Yes, DESeq() then results(). When you print the table it will say MLE.
No we don’t have a function to do that.
Comment: Recalculated abundance data output table with DEseq2
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michael.morash
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Thanks for getting back to me so quickly. The final comparison we are looking to report are the effects of filtering out low count genes us…
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
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Field -Ye
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Hi Professor Smyth,
Thank you for pointing me to your previous publication. I went through the verbal part and found you did pursue the DG…
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