I tried to re-analyse RNA-seq data that was made available on GEO and referred to in a publication.
However, the only "raw" data that was made available was the rlog table extracted from assay(rld) (at least that's what I understand from the labeling of the provided table).
Is there any way to feed this table with rlog values into the DESeq function and defining the groups I want to compare?
Or would I need the raw count table to actually re-do the analysis? I would assume so, but I wanted to double-check.