Detect Sites with Minimum Gap in GRanges Object
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g.k • 0
@gk-13275
Last seen 6.0 years ago

Hello,

I have a GRange object and I am using the findOverlaps() function inorder to control the minOverlap and maxGap.

However I was wondering if there is a way to get the opposite? Is there a way to get the sites that have a  maxOverlap and the minGap?

 seqnames     ranges        strand
  chr1              [106, 116]      +
  chr1              [118, 120]      +
  chr1              [124, 130]      +
  chr2              [131, 140]      +

 

So if we chose a minGap of 2 , then the first 3 sites would be selected.

 

R genomicranges granges grange • 1.1k views
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It would help to know more about your high-level use case. Why are you doing this?

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