Detect Sites with Minimum Gap in GRanges Object
0
0
Entering edit mode
g.k • 0
@gk-13275
Last seen 5.4 years ago

Hello,

I have a GRange object and I am using the findOverlaps() function inorder to control the minOverlap and maxGap.

However I was wondering if there is a way to get the opposite? Is there a way to get the sites that have a  maxOverlap and the minGap?

 seqnames     ranges        strand
  chr1              [106, 116]      +
  chr1              [118, 120]      +
  chr1              [124, 130]      +
  chr2              [131, 140]      +

 

So if we chose a minGap of 2 , then the first 3 sites would be selected.

 

R genomicranges granges grange • 920 views
ADD COMMENT
0
Entering edit mode

It would help to know more about your high-level use case. Why are you doing this?

ADD REPLY

Login before adding your answer.

Traffic: 555 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6