I have a GRange object and I am using the findOverlaps() function inorder to control the minOverlap and maxGap.
However I was wondering if there is a way to get the opposite? Is there a way to get the sites that have a maxOverlap and the minGap?
seqnames ranges strand
chr1 [106, 116] +
chr1 [118, 120] +
chr1 [124, 130] +
chr2 [131, 140] +
So if we chose a minGap of 2 , then the first 3 sites would be selected.