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grange
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0
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290
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Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
3.1 years ago
mawusse.agbessi
• 0
2
votes
0
replies
468
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
3.4 years ago
rmash
▴ 20
0
votes
1
reply
418
views
Multi-sample Heatmap from GRange
GRange
updated 4.3 years ago by
James W. MacDonald
62k • written 4.3 years ago by
Danny
• 0
0
votes
3
replies
1.6k
views
Selecting columns form a list of grange objects
r
granges
grange
4.5 years ago
g.k
• 0
1
vote
3
replies
671
views
GRange and bam files
bioconductor
Grange
4.9 years ago
Merlin
▴ 10
0
votes
1
reply
691
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
5.0 years ago
g.k
• 0
1
vote
2
replies
863
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 5.0 years ago by
Michael Lawrence
11k • written 5.0 years ago by
g.k
• 0
3
votes
4
replies
4.2k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
endrebak85
▴ 30
1
vote
2
replies
2.0k
views
Extract GRanges for gene data frame
GRange
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
mdeea123
▴ 10
9
votes
21
replies
9.2k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 7.2 years ago by
Ou, Jianhong
★ 1.3k • written 7.2 years ago by
tangming2005
▴ 190
0
votes
1
reply
827
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 8.2 years ago by
Valerie Obenchain
★ 6.7k • written 8.2 years ago by
cidster12
• 0
4
votes
2
replies
1.0k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
8.3 years ago
Bogdan
▴ 660
12 results • Page
1 of 1
Recent ...
Replies
Comment: how can I do gene differential analysis on data after vst
by
linouhao
▴ 20
Thanks a lot. so do you know when professor Gordon Smyth says 'Differential expression analysis of vst values can be performed by limma-t…
Comment: Help with Error in DiffBind
by
Rory Stark
★ 4.7k
Apologies. The first line should be result <- dba(sampleSheet=samples) I've gone back and edited previous replies to reflect this.
Answer: *** caught segfault *** , cause 'memory not mapped'
by
James W. MacDonald
62k
You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…
Comment: Help with Error in DiffBind
by
Chris
• 0
Thanks Rory! result <- dba(samples) Error in if ((length(callers) == 1) & (callers[1] == "counts")) { : argument is of len…
Answer: Help with Error in DiffBind
by
Rory Stark
★ 4.7k
In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…
Votes
Analyzing RNA-seq data by WGCNA
A: Analyzing RNA-seq data by WGCNA
Comment: Help with Error in DiffBind
WGCNA: Module preservation vs consensus analysis
WGCNA: Module preservation vs consensus analysis
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