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grange
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Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
5.2 years ago
mawusse.agbessi
• 0
2
votes
0
replies
1.0k
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
5.5 years ago
rmash
▴ 20
0
votes
1
reply
796
views
Multi-sample Heatmap from GRange
GRange
updated 6.4 years ago by
James W. MacDonald
68k • written 6.4 years ago by
Danny
• 0
0
votes
3
replies
3.2k
views
Selecting columns form a list of grange objects
r
granges
grange
6.7 years ago • updated 6.6 years ago
g.k
• 0
1
vote
3
replies
1.3k
views
GRange and bam files
bioconductor
Grange
7.0 years ago
Merlin
▴ 10
0
votes
1
reply
1.2k
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
7.1 years ago
g.k
• 0
1
vote
2
replies
2.1k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 7.2 years ago by
Michael Lawrence
★ 11k • written 7.2 years ago by
g.k
• 0
3
votes
4
replies
6.1k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
endrebak85
▴ 40
1
vote
2
replies
2.8k
views
Extract GRanges for gene data frame
GRange
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
mdeea123
▴ 10
9
votes
21
replies
13k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 9.4 years ago by
Ou, Jianhong
★ 1.3k • written 9.4 years ago by
tangming2005
▴ 200
0
votes
1
reply
1.2k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 10.3 years ago by
Valerie Obenchain
★ 6.8k • written 10.3 years ago by
cidster12
• 0
4
votes
2
replies
1.5k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
10.5 years ago • updated 10.4 years ago
Bogdan
▴ 670
12 results • Page
1 of 1
Recent ...
Replies
Comment: parameters of filterByExpr
by
caroline.zanchi
▴ 10
It worked, I think I finally understand and accept that fact. Sorry and thank you again !
Comment: parameters of filterByExpr
by
Gordon Smyth
52k
You seem to be coming back to the same fixed (but incorrect) idea of what filterByExpr() should be doing. I have tried to explain that filt…
Answer: edgeR in DMR mode - replicates give batch effect - how to build design matrix wi
by
Gordon Smyth
52k
modelMatrixMeth() works correctly. The second replicate factor has not been lost. Please do not make ad hoc manual modifications to the de…
Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
by
James W. MacDonald
68k
Probably not. Any given gene may be appended with many different GO terms, so you would end up with something that is not very useful. ``…
Comment: Heatmap of rnaseq data with z-score scale
by
James W. MacDonald
68k
`heatmap.2` is a CRAN package, and that's the relevant issue for this plot. It's got nothing to do with `DESeq2` or any other Bioconductor …
Votes
Answer: LogFC values in edgeR - w/wo intercept
How to formulate 2 factor nested design in DESeq2
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
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