Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
grange
•
reset
0
votes
1
reply
533
views
Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
4.2 years ago
mawusse.agbessi
• 0
2
votes
0
replies
786
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
4.5 years ago
rmash
▴ 20
0
votes
1
reply
598
views
Multi-sample Heatmap from GRange
GRange
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
Danny
• 0
0
votes
3
replies
2.4k
views
Selecting columns form a list of grange objects
r
granges
grange
5.6 years ago
g.k
• 0
1
vote
3
replies
950
views
GRange and bam files
bioconductor
Grange
6.0 years ago
Merlin
▴ 10
0
votes
1
reply
924
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
6.0 years ago
g.k
• 0
1
vote
2
replies
1.4k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 6.1 years ago by
Michael Lawrence
★ 11k • written 6.1 years ago by
g.k
• 0
3
votes
4
replies
5.2k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
endrebak85
▴ 40
1
vote
2
replies
2.3k
views
Extract GRanges for gene data frame
GRange
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
mdeea123
▴ 10
9
votes
21
replies
11k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 8.3 years ago by
Ou, Jianhong
★ 1.3k • written 8.3 years ago by
tangming2005
▴ 190
0
votes
1
reply
1.0k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 9.2 years ago by
Valerie Obenchain
★ 6.8k • written 9.2 years ago by
cidster12
• 0
4
votes
2
replies
1.2k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
9.4 years ago
Bogdan
▴ 670
12 results • Page
1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
Awards
• All
Popular Question
to
Leo Lahti
▴ 40
Scholar
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Locations
• All
France,
22 minutes ago
WEHI, Melbourne, Australia,
26 minutes ago
Australia,
2 hours ago
Melbourne, Australia,
2 hours ago
INDIA,
3 hours ago
Traffic: 657 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6