I have tried to load AnnotationHub to 2 machine (windows 10 and Mac ox ) both attempts failed miserably
tried different commands+ updated R & R Studio to latest versions ! nothing helped, it seemed it does installed it but i can load it due some other packages getting in the way! masked object ! packages not avoid;avle in compiled versions etc , in widows it give me the same error message but the package name at the end of the error messge called shiny , in mac it is called bit
also loadNamespace consistence on both platform, I haven't used R in a while so I thought the update will solve the problem ! but it didn't
this is from my Max machine
> BiocInstaller::biocValid() [1] TRUE > library(AnnotationHub) Loading required package: BiocGenerics Loading required package: parallel Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:parallel’: clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: anyDuplicated, append, as.data.frame, basename, cbind, colMeans, colnames, colSums, dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted, lapply, lengths, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rowMeans, rownames, rowSums, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Error: package or namespace load failed for ‘AnnotationHub’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called ‘bit’ > library(AnnotationHub) Error: package or namespace load failed for ‘AnnotationHub’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called ‘bit’