How to find non-DE miRNAs using Deseq2 ?
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Björn • 0
@bjorn-12199
Last seen 5.4 years ago
CH

Hi, as most of the RNA sequencing analysis is focused on identifying DE miRNA expressed between comparison groups. How about non-DE miRNA is prospective study. 
Scenario 1. Suppose, I am investigating impact of Drug A for Cancer treatment. My hypothesis is that the expression of certain miRNAs should remain stable or not change after treatment or remain similar as before administering Drug A. How to find such miRNAs which did not change or induced by Drug A ? How can I do such analysis in DESEQ2 ?

deseq2 differentially expression mirna-seq mirna target prediction • 825 views
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@mikelove
Last seen 23 hours ago
United States

See "Tests of log2 fold change above or below a threshold" in the vignette.

https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#tests-of-log2-fold-change-above-or-below-a-threshold

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