Bioconductor Mirna-seq

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deseq2 rnaseq mirna-seq differential gene expression

written 5.7 years ago by klalit1803 • 0

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875

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mirna-seq limma

updated 5.3 years ago by Gordon Smyth 48k • written 5.3 years ago by Michael Stone • 0

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804

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mirna-seq

updated 5.5 years ago by Levi Waldron 1.1k • written 5.5 years ago by ndiayediop2 • 0

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704

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mirna-seq

5.6 years ago • updated 5.5 years ago ndiayediop2 • 0

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2.3k

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r survival analysis rtcga tcgabiolinks mirna-seq

5.5 years ago atakanekiz ▴ 30

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613

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deseq2 differentially expression mirna-seq mirna target prediction

updated 5.5 years ago by Michael Love 41k • written 5.5 years ago by Björn • 0

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866

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DESeq2 mirna-seq small RNA-seq

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by CandiceChuDVM ▴ 40

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4.2k

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deseq2 mirna-seq experimental design differential expression

updated 6.6 years ago by Gavin Kelly ▴ 670 • written 6.6 years ago by francesco.gandolfi ▴ 10

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4.2k

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miRNA mirna-seq

updated 6.7 years ago by Jon Bråte ▴ 250 • written 6.7 years ago by just • 0

9 results • Page 1 of 1

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Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

Comment: GOslim missing GO term by James W. MacDonald 64k

What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…

Comment: GOslim missing GO term by amanda • 0

I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…

Votes

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k