Bioconductor Mirna-seq

Showing : mirna-seq • reset

votes

replies

7.4k

views

deseq2 rnaseq mirna-seq differential gene expression

written 8.0 years ago by klalit1803 ▴ 20

votes

replies

1.6k

views

mirna-seq limma

updated 7.5 years ago by Gordon Smyth 53k • written 7.5 years ago by Michael Stone • 0

votes

replies

1.4k

views

mirna-seq

updated 7.7 years ago by Levi Waldron ★ 1.1k • written 7.7 years ago by ndiayediop2 • 0

vote

replies

1.2k

views

mirna-seq

7.8 years ago • updated 7.7 years ago ndiayediop2 • 0

votes

replies

3.8k

views

r survival analysis rtcga tcgabiolinks mirna-seq

7.7 years ago atakanekiz ▴ 30

votes

1.0k

views

deseq2 differentially expression mirna-seq mirna target prediction

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by Björn • 0

votes

replies

1.5k

views

DESeq2 mirna-seq small RNA-seq

updated 8.1 years ago by Michael Love 43k • written 8.1 years ago by CandiceChuDVM ▴ 40

vote

replies

5.2k

views

deseq2 mirna-seq experimental design differential expression

updated 8.8 years ago by Gavin Kelly ▴ 690 • written 8.8 years ago by francesco.gandolfi ▴ 10

votes

replies

6.2k

views

miRNA mirna-seq

updated 8.9 years ago by Jon Bråte ▴ 270 • written 9.0 years ago by just • 0

9 results • Page 1 of 1

Recent ...

Replies

Answer: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k

I'm not familiar with the packages you mention, but the whole reason why Bioconductor has versions is that code and annotation change. Code…

Comment: Question on processing compound protein groups in limpa by JKim • 0

Many thanks. I appreciate your advice.

Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k

Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…

Answer: Correct usage of limpa for protein input by Gordon Smyth 53k

limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…

Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0

Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…

Votes

Answer: Question on processing compound protein groups in limpa

Answer: Correct usage of limpa for protein input

A: Interpretaion of dendrogram height in WGCNA?

Awards • All

Popular Question to Dario Strbenac ★ 1.6k

Popular Question to chirag.parsania ▴ 10