Installing package BiocParallel failed
1
1
Entering edit mode
Jiang, Mike ★ 1.3k
@jiang-mike-4886
Last seen 3.2 years ago
(Private Address)
> biocLite("BiocParallel")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.8 (BiocInstaller 1.31.1), R 3.5.0 (2018-04-23).
Installing package(s) ‘BiocParallel’
Warning message:
package ‘BiocParallel’ is not available (for R version 3.5.0) 
> sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.4 LTS

Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.31.1

loaded via a namespace (and not attached):
[1] compiler_3.5.0 tools_3.5.0   
biocparallel • 1.9k views
ADD COMMENT
0
Entering edit mode
@martin-morgan-1513
Last seen 4 months ago
United States

The 'devel' software repository was 'flushed' (all packages removed then repopulated) so that packages would include a Date/Published: field inserted by the nightly builder. Unfortunately, package that fail to build do not get pushed to the flushed repository, and BiocParallel had a timeout on the nightly builds. Until the timeout clears, your best bet is to install this from source

git clone https://git.bioconductor.org/packages/BiocParallel
R CMD INSTALL BIocParallel

This problem is transient, and only a small number of packages are affected.

ADD COMMENT

Login before adding your answer.

Traffic: 919 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6