Question

single cell RNA-seq pipeline

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Bogdan ▴ 670

@bogdan-2367

Last seen 14 months ago

Palo Alto, CA, USA

Dear all,

please would you advise about a single cell RNA-seq pipeline/scRNA-seq libraries in R/BioC that are both mature and user-friendly that we can use ? Thank you very much,

bogdan

rnaseq scRNA-seq • 1.5k views

ADD COMMENT • link updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by Bogdan ▴ 670

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In general, look at https://bioconductor.org/packages and then the 'Workflows' biocViews terms.

ADD REPLY • link 6.4 years ago Martin Morgan 25k

score 0 · Answer 1 · 2018-07-17

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Aaron Lun ★ 28k

@alun

Last seen 9 hours ago

The city by the bay

Yes, I can.

http://bioconductor.org/packages/devel/workflows/html/simpleSingleCell.html

ADD COMMENT • link 6.4 years ago Aaron Lun ★ 28k

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You gentlemen are awesome ! Aaron and Martin, thank you very much !

ADD REPLY • link 6.4 years ago Bogdan ▴ 670