I am using ATACseqQC to plot DNA footprinting. I want to compare the DNA footprinting between different samples. Would it be possible to get DNA footprinting graphs with same scale to make them be comparable? For example, for CTCF, I got some from 0 to 0.2, other from 0 to 0.14, from 0 to 0.25, etc. Also, what is the meaning of the 2 discontinuous red lines?
Thanks in advance