Showing : atacseqqc • reset
1
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692
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Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 23 months ago by 68k • written 23 months ago by • 0
0
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0
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659
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Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
24 months ago danalvoronov ▴ 10
0
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7
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1.9k
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ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 24 months ago by ▴ 10 • written 2.2 years ago by • 0
0
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1
reply
1.1k
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Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 3.1 years ago by ★ 1.4k • written 3.1 years ago by • 0
0
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0
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1.1k
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[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
3.9 years ago hyjforesight • 0
1
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7
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2.3k
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TSSEscore function in ATACseqQC package
ATACseqQC
4.1 years ago Liu Yu-Yu • 0
0
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3
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1.9k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 3.5 years ago by ★ 5.3k • written 4.4 years ago by ▴ 40
0
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0
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765
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ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
4.5 years ago xuyao15927402897 • 0
0
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0
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880
views
NAs in TSSE for certain windows
ATACseqQC
4.5 years ago red_bricks ▴ 60
0
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2
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2.4k
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*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
4.7 years ago Nolan • 0
0
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9
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6.2k
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No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
4.8 years ago Xiaojie Cheng • 0
1
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4
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1.8k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 5.5 years ago by ★ 4.3k • written 5.5 years ago by ▴ 10
0
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4
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3.4k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 5.5 years ago by ★ 1.4k • written 5.5 years ago by • 0
1
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2
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15k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 5.5 years ago by ★ 1.4k • written 5.5 years ago by • 0
1
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4
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1.5k
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
5.6 years ago Arpi Beshlikyan • 0
0
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5
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2.3k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 5.8 years ago by ★ 4.0k • written 5.8 years ago by • 0
0
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5
replies
2.6k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 6.5 years ago by 68k • written 6.5 years ago by • 0
0
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2
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1.5k
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factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
1
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2
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2.0k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
6.6 years ago beiting ▴ 30
1
vote
11
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3.7k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
0
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7
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2.5k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
0
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1
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1.6k
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
0
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7
replies
2.7k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 6.7 years ago by ★ 13k • written 6.7 years ago by • 0
0
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6
replies
2.8k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 6.8 years ago by • 0 • written 6.8 years ago by ▴ 10
0
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0
replies
1.2k
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
6.9 years ago Gary ▴ 30
4
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5
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2.2k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 7.0 years ago by ★ 4.3k • written 7.0 years ago by ▴ 30
11
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21
replies
7.6k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 7.0 years ago by ★ 4.3k • written 7.0 years ago by ▴ 30
0
votes
3
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1.5k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 7.6 years ago by ★ 1.4k • written 7.6 years ago by ▴ 10
0
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9
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2.4k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 7.6 years ago by ★ 4.3k • written 7.6 years ago by ▴ 10
0
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1
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1.5k
views
ATACseqQC: a few questions
ATACseqQC
updated 7.6 years ago by ★ 4.3k • written 7.7 years ago by • 0
0
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1
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1.3k
views
ATACseqQC questions in R language
atacseqqc
updated 7.7 years ago by ★ 1.4k • written 7.7 years ago by • 0
0
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1
reply
2.3k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 7.9 years ago by ★ 1.4k • written 7.9 years ago by • 0
0
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7
replies
3.2k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 8.0 years ago by • 0 • written 8.0 years ago by ▴ 10
0
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2
replies
1.5k
views
ATACseqQC needs too much memory
ATACseqQC
updated 8.2 years ago by ★ 4.3k • written 8.2 years ago by • 0
5
votes
9
replies
5.4k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 8.8 years ago by ★ 1.4k • written 8.8 years ago by ▴ 10
35 results • Page 1 of 1
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Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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