Showing : atacseqqc • reset
1
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332
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Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 7 months ago by 67k • written 7 months ago by • 0
0
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0
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266
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Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
7 months ago danalvoronov ▴ 10
0
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7
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1.0k
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ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 7 months ago by ▴ 10 • written 10 months ago by • 0
0
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1
reply
737
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Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 21 months ago by ★ 1.3k • written 21 months ago by • 0
0
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0
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736
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[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
2.6 years ago hyjforesight • 0
1
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7
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1.6k
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TSSEscore function in ATACseqQC package
ATACseqQC
2.7 years ago Liu Yu-Yu • 0
0
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3
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1.3k
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package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 2.1 years ago by ★ 5.2k • written 3.0 years ago by ▴ 30
0
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0
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540
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ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
3.1 years ago xuyao15927402897 • 0
0
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0
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599
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NAs in TSSE for certain windows
ATACseqQC
3.1 years ago red_bricks ▴ 60
0
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2
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1.6k
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*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
3.3 years ago Nolan • 0
0
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9
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4.1k
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No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
3.5 years ago • updated 3.4 years ago Xiaojie Cheng • 0
1
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4
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1.3k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 4.1 years ago by ★ 4.3k • written 4.1 years ago by ▴ 10
0
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4
replies
2.2k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 4.1 years ago by ★ 1.3k • written 4.1 years ago by • 0
1
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2
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11k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 4.1 years ago by ★ 1.3k • written 4.2 years ago by • 0
1
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4
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1.1k
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
4.2 years ago Arpi Beshlikyan • 0
0
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5
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1.6k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
0
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5
replies
1.9k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 5.1 years ago by 67k • written 5.1 years ago by • 0
0
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2
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1.1k
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factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by • 0
1
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2
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1.6k
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ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
5.2 years ago beiting ▴ 30
1
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11
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2.7k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by • 0
0
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7
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1.8k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by • 0
0
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1
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1.1k
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by • 0
0
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7
replies
2.0k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 5.3 years ago by ★ 13k • written 5.3 years ago by • 0
0
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6
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2.1k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.4 years ago by • 0 • written 5.4 years ago by ▴ 10
0
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0
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885
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.5 years ago Gary ▴ 20
2
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5
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1.7k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by ▴ 20
11
votes
21
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5.7k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 5.7 years ago by ★ 4.3k • written 5.7 years ago by ▴ 20
0
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3
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1.1k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by ▴ 10
0
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9
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1.8k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 6.2 years ago by ★ 4.3k • written 6.2 years ago by ▴ 10
0
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1
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1.1k
views
ATACseqQC: a few questions
ATACseqQC
updated 6.3 years ago by ★ 4.3k • written 6.3 years ago by • 0
0
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1
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1.0k
views
ATACseqQC questions in R language
atacseqqc
updated 6.3 years ago by ★ 1.3k • written 6.3 years ago by • 0
0
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1
reply
1.8k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.5 years ago by ★ 1.3k • written 6.6 years ago by • 0
0
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7
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2.4k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 6.6 years ago by • 0 • written 6.7 years ago by ▴ 10
0
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2
replies
1.2k
views
ATACseqQC needs too much memory
ATACseqQC
updated 6.8 years ago by ★ 4.3k • written 6.8 years ago by • 0
5
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9
replies
4.2k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by ▴ 10
35 results • Page 1 of 1
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Answer: Highly DE genes but small count difference within conditions by h1vu81gcd7 • 0
It sounds like you're diving deep into DE analysis, comparing condition1 with the control using a solid design. However, the elevated padj …
Comment: dmpFinder for other objects by neyousha • 0
Hi James, Thank you a lot for responding. Hmm... so do you think if have matrix average_beta below: ![average_beta_matrix][1] [1]:…
Comment: DEseq2 time-series design by Michael Love 42k
Would you mind making a new post -- it's just easier for threaded content. And feel free to post any particular code or images you need.
Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes by Yang Liao ▴ 440
Thanks for taking the time to report the bug! The provided `Valgrind` report is very helpful and suggests the issue lies within the banded …
Comment: Rsubread - Error on buildindex - big ref sequence by mdejesus • 0
Hi just checking if this limit still exists, and/or if there are plans to lift it? subread is our preferred tool kit, but we have some CRIS…
Votes
Answer: dmpFinder for other objects
GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
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