Showing : atacseqqc • reset
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Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 10 months ago by ★ 1.3k • written 10 months ago by • 0
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0
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439
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[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
20 months ago hyjforesight • 0
1
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7
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1.2k
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TSSEscore function in ATACseqQC package
ATACseqQC
22 months ago Liu Yu-Yu • 0
0
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3
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926
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package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 15 months ago by ★ 5.1k • written 2.1 years ago by ▴ 30
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0
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379
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ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
2.3 years ago xuyao15927402897 • 0
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0
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382
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NAs in TSSE for certain windows
ATACseqQC
2.3 years ago red_bricks ▴ 50
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2
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1.2k
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*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
2.5 years ago Nolan • 0
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9
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2.8k
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No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
2.6 years ago Xiaojie Cheng • 0
1
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4
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974
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How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 3.2 years ago by ★ 4.3k • written 3.2 years ago by ▴ 10
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4
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1.7k
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ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 3.3 years ago by ★ 1.3k • written 3.3 years ago by • 0
1
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2
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7.8k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 3.3 years ago by ★ 1.3k • written 3.3 years ago by • 0
1
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4
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802
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Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
3.3 years ago Arpi Beshlikyan • 0
0
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5
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1.2k
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ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 3.5 years ago by 3.9k • written 3.5 years ago by • 0
0
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5
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1.4k
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ATACseqQC installation fails at shiny step
ATACseqQC
updated 4.2 years ago by 64k • written 4.2 years ago by • 0
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2
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859
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factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 4.3 years ago by ★ 4.3k • written 4.3 years ago by • 0
1
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2
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1.2k
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ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
4.3 years ago beiting ▴ 30
1
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11
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1.9k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 4.4 years ago by ★ 4.3k • written 4.4 years ago by • 0
0
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7
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1.3k
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ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 4.4 years ago by ★ 4.3k • written 4.4 years ago by • 0
0
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1
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793
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ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 4.4 years ago by ★ 4.3k • written 4.4 years ago by • 0
0
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7
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1.6k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 4.4 years ago by 13k • written 4.4 years ago by • 0
0
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6
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1.7k
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atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 4.6 years ago by • 0 • written 4.6 years ago by • 0
0
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0
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653
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Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
4.7 years ago Gary ▴ 20
2
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5
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1.3k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by ▴ 20
11
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21
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4.5k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by ▴ 20
0
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3
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907
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Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 5.4 years ago by ★ 1.3k • written 5.4 years ago by ▴ 10
0
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9
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1.3k
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use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 5.4 years ago by ★ 4.3k • written 5.4 years ago by ▴ 10
0
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1
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902
views
ATACseqQC: a few questions
ATACseqQC
updated 5.4 years ago by ★ 4.3k • written 5.4 years ago by • 0
0
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1
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789
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ATACseqQC questions in R language
atacseqqc
updated 5.5 years ago by ★ 1.3k • written 5.5 years ago by • 0
0
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1
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1.5k
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Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 5.7 years ago by ★ 1.3k • written 5.7 years ago by • 0
0
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7
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1.9k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 5.8 years ago by • 0 • written 5.8 years ago by ▴ 10
0
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2
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938
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ATACseqQC needs too much memory
ATACseqQC
updated 6.0 years ago by ★ 4.3k • written 6.0 years ago by • 0
5
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9
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3.4k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 6.5 years ago by ★ 1.3k • written 6.5 years ago by ▴ 10
32 results • Page 1 of 1
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Comment: Ensembl down??? by James W. MacDonald 64k
Yup, they seem to be down. What exactly are you trying to do? There may be other options.
Answer: Result from GSEA for non-model organism not as expected by Aastha Kapoor • 0
I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…
Comment: Timely differentially expressed genes by triZZla • 0
Thanks, but what is the lowest that you have seen in such circumstances ? And did you have systematically calculated it actually or just re…
Comment: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i by ATpoint ★ 3.6k
What is the output of below_zero <- apply(miRNA_counts < 0, 1, sum) > 0 miRNA_counts[below_zero,,drop=FALSE]
Comment: Problem loading HDF5Array in R 4.3.2 by Mike Smith ★ 6.2k
Based on the error message this looks like the "invalid permissions" are referring to something in memory rather than your file system. If…
Votes
Comment: Ensembl down???
Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
Result from GSEA for non-model organism not as expected
Comment: DESeq2 estimateSizeFactors iterate takes too long
Answer: DESeq2 estimateSizeFactors iterate takes too long
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