GEOquery install problem
0
0
Entering edit mode
261092095 ▴ 10
@261092095-16052
Last seen 6.3 years ago

When I use the following code to install the 'GEOquery' package, the following error message always appears. When I select "y", I will always prompt the installation error, I hope to get your help!

> source("http://bioconductor.org/biocLite.R")
Bioconductor version 3.2 (BiocInstaller 1.20.3), ?biocLite for help
A new version of Bioconductor is available after installing the most recent version of R; see
  http://bioconductor.org/install
> biocLite('GEOquery')
wget: /pub/anaconda3/lib/libcrypto.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
BioC_mirror: http://bioconductor.org

.....

Update all/some/none? [a/s/n]: 
a
Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl,  :
  'lib = "/pub/anaconda3/lib/R/library"' is not writable
Would you like to use a personal library instead?  (y/n) y

wget: /pub/anaconda3/lib/libcrypto.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
--2018-07-25 22:42:27--  https://cran.rstudio.com/src/contrib/acepack_1.4.1.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... wget: /pub/anaconda3/lib/libcrypto.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
--2018-07-25 22:42:27--  https://cran.rstudio.com/src/contrib/acepack_1.4.1.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 13.32.110.202
Connecting to cran.rstudio.com (cran.rstudio.com)|13.32.110.202|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 34848 (34K) [application/x-gzip]
Saving to: ‘/tmp/Rtmppfg8gB/downloaded_packages/acepack_1.4.1.tar.gz’

     0K .......... .......... .......... ....                 100%  148K=0.2s

2018-07-25 22:42:34 (148 KB/s) - ‘/tmp/Rtmppfg8gB/downloaded_packages/acepack_1.4.1.tar.gz’ saved [34848/34848]

wget: /pub/anaconda3/lib/libcrypto.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
--2018-07-25 22:42:34--  https://cran.rstudio.com/src/contrib/assertthat_0.2.0.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 13.32.110.202
Connecting to cran.rstudio.com (cran.rstudio.com)|13.32.110.202|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 11612 (11K) [application/x-gzip]
Saving to: ‘/tmp/Rtmppfg8gB/downloaded_packages/assertthat_0.2.0.tar.gz’

 

 

geoquery • 984 views
ADD COMMENT
0
Entering edit mode

It looks like these are informational messages, rather than errors? And it looks like a conda problem, not a Bioconductor problem?

ADD REPLY

Login before adding your answer.

Traffic: 1607 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6