I am trying to find a way to conveniently recognize mitochondrial genes in a csv file, which is a readcounts for single-seq RNA-Seq data obtaiened from human.
The workflow that I’m working with (https://f1000research.com/articles/5-2122/v2) has used the following command:
is.mito <- grepl("^mt-", rownames(sce))
When I run this command I do not face any error, but then there is nothing in is.mito. Following is a schematic of this csv file:
BR21_1_SC1_052113 BR21_1_SC2_052113 BR21_1_SC3_052113
eg:1:chr19:m 0 0 0
eg:10:chr8:p 0 145 0
eg:100:chr20:m 29 0 18
Thanks for your help.