Showing : single-cell • reset
1
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119
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question for "Chapter 24 Zeisel mouse brain (STRT-Seq) in single-cell"
STRT-Seq single-cell tutorial
updated 10 months ago by ★ 26k • written 10 months ago by • 0
0
votes
3
replies
565
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Issue with scp transfer of DESeq2 objects
deseq2 scp Unix Single-Cell
updated 16 months ago by 25k • written 16 months ago by • 0
5
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6
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799
views
How to build and map to a "pre-mRNA" reference transcriptome for single nucleus RNA-seq data?
tximeta ensembldb single-cell snRNA-seq tximport
updated 19 months ago by ★ 2.7k • written 19 months ago by ▴ 80
0
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1
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311
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Scran: Performing DE after cell-typle identifaction on the corrected and integrated datasets
Scran MNN_correct Differential expression single-cell
2.2 years ago baldissera152 • 0
7
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12
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1.4k
views
How to identify real cells in 10X RNA-seq ?
single-cell 10X Cell calling DropletUtils cellranger
updated 2.2 years ago by ★ 26k • written 2.2 years ago by ▴ 20
0
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0
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253
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Job: Biostatistics Analyst II - high throughput single-cell assays
biostatistics single-cell high throughput Job
2.3 years ago careers • 0
3
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0
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463
views
Job: Postdoctoral Scientist position at intersection of Single-Cell Cancer Genomics, Data Science and Bioconductor Software Development
job single-cell data science cancer genomics Job
2.3 years ago Stephanie Hicks ▴ 80
2
votes
2
replies
762
views
[MnnCorrect] Remove batch effects but keep condition effects
single-cell scran mnncorrect rnaseq
updated 2.4 years ago by ★ 26k • written 2.4 years ago by ▴ 10
1
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0
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342
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Job: applied methods development for single-cell sequencing
single-cell job computational biology Job
2.5 years ago Simon Anders ★ 3.6k
3
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2
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697
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Seurat to SingleCellExperiment Converting error in MAC
singlecellexperiment single-cell rnaseq
updated 2.5 years ago by 13k • written 2.5 years ago by ▴ 50
0
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0
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415
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Job: PhD opportunity in Heidelberg for computational people
PhD position job single-cell Job
2.6 years ago Simon Anders ★ 3.6k
1
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5
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1.0k
views
newSCESet and SingleCellExperiment basic differences and TMM Normalization
singlecellexperiment single-cell rnaseq seurat scater
2.6 years ago hamza_karakurt ▴ 50
1
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1
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375
views
Problem with finding mitochondrial genes in a human single cell RNA-Seq readCounts file
single-cell rnaseq mitochondria
updated 2.7 years ago by ★ 26k • written 2.7 years ago by • 0
0
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3
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371
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Error of makeTechTrend() of Scran
scran single-cell seq.default
updated 2.7 years ago by ★ 26k • written 2.7 years ago by • 0
1
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1
reply
533
views
Adjust number of clusters with scran/buildSNNGraph
scran buildsnngraph cluster_walktrap single-cell
updated 2.8 years ago by ★ 26k • written 2.8 years ago by • 0
3
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3
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3.7k
views
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scater scran single-cell
updated 2.9 years ago by 25k • written 3.0 years ago by ▴ 10
2
votes
1
reply
771
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MAST: testing differential expression with a nested factorial design
MAST single-cell rna-seq
updated 3.1 years ago by ▴ 260 • written 3.1 years ago by ▴ 20
0
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4
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2.2k
views
Change point size and remove outline in scater's plotPCA
scater rnaseq single-cell
updated 3.1 years ago by • 0 • written 4.0 years ago by ▴ 60
0
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28
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1.0k
views
Job: Postdoc on integrating and analyzing new transcriptome types in the Bgee database
rnaseq data integration single-cell pacbio across species Job
3.1 years ago bgee • 0
1
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3
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524
views
Differential expressiong with two groups in BASiCS
BASiCS single-cell bayesian differential expression
updated 3.2 years ago by ▴ 10 • written 3.3 years ago by ▴ 10
4
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3
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677
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single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 3.3 years ago by ▴ 260 • written 3.3 years ago by ▴ 90
4
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5
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699
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SC3 gene clusters
SC3 single cell single-cell Tutorial
updated 3.5 years ago by 25k • written 3.5 years ago by ▴ 20
3
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3
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1.1k
views
How do you test a contrast in MAST?
MAST single-cell differential gene expression
updated 3.7 years ago by ▴ 260 • written 3.7 years ago by ▴ 40
5
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6
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1.3k
views
Error when merging SCESet objects
scater single-cell
updated 3.7 years ago by ★ 26k • written 3.7 years ago by ▴ 20
1
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1
reply
828
views
Does SC3 correct counts for gene length?
sc3 scater single-cell rna-seq biclustering
updated 3.7 years ago by ▴ 150 • written 3.7 years ago by ▴ 20
2
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3
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691
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Scran functions not found
single-cell scran
updated 3.7 years ago by ★ 26k • written 3.7 years ago by • 0
2
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9
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1.3k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 3.8 years ago by ▴ 870 • written 3.8 years ago by ▴ 70
1
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0
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1.7k
views
Tutorial: BoF Bioc2017: Infrastructure for efficient storage and processing of large-scale single-cell genomics data
single-cell objectstorage Tutorial
3.8 years ago shepherl 2.6k
0
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5
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1.4k
views
[MnnCorrect] In case of known subpopulations
scran single-cell mnncorrect rnaseq
3.8 years ago Jens Preussner ▴ 30
4
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2
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655
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sc3_plot_expression, colour labels
sc3 single-cell
updated 3.9 years ago by ▴ 150 • written 3.9 years ago by ▴ 20
3
votes
3
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615
views
Sharing SC3_interactive results
SC3 single-cell shiny
updated 4.0 years ago by ▴ 150 • written 4.0 years ago by ▴ 20
0
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0
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538
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Rstudio crashes when running monocole
monocole single-cell rstudio
4.0 years ago Assa Yeroslaviz ★ 1.5k
2
votes
5
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941
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sc3_prepare function error
sc3 scater single-cell single cell
updated 4.2 years ago by ▴ 150 • written 4.2 years ago by ★ 1.5k
3
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6
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2.0k
views
How to properly normalize a single-cell sparse matrix?
Dropseq single-cell normalization sparse
updated 4.7 years ago by ★ 26k • written 4.7 years ago by ▴ 20
0
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0
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1.2k
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News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop statistics single-cell News
4.7 years ago Wolfgang Huber 13k
0
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1.3k
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Job: Two Postdoc Positions in Evolutionary Single-Cell Genomics (experimental and computational)
evolution single-cell development differentiation cool Job
4.8 years ago Wolfgang Huber 13k
36 results • Page 1 of 1
Recent ...
Replies
Comment: IRanges::findOverlapPairs cannot take inputs if they are too large by Yixin • 0
Your solution is amazing! `unlist()` then `split()` really do the trick. I didn't know `split()` can relist the results perfectly via the g…
Answer: limma - removing samples? by Gordon Smyth 42k
In general, it is best to analyse each independent dataset with all the samples as it was originally analysed. There is no need to restrict…
Comment: DESeq2 Model Design by Michael Love 32k
Hi, I'm sorry but I don't have time at the moment to provide guidance on setting up the statistical analysis for user's datasets. I recomm…
Comment: Error wth Installation BiocManager by Martin Morgan 25k
And to be clear, does ``` readLines("https://bioconductor.org/config.yaml") ``` work? (or with `http://`)? If not, then it is definitely a …
Comment: DESeq2 Model Design by drives • 0
Hello, This particular thread has been incredibly useful. Thanks so much. I am slightly confused about comparing treatments. I have a data…
Votes
Answer: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
C: Adjust for multiple batches using combat
A: Adjust for multiple batches using combat
Comment: Unable to install packages on MacOS
Answer: how can I annotate my scRNAseq clusters from a Rat experiment?
Awards • All
Scholar to James W. MacDonald 56k
Scholar to Martin Morgan 25k
Scholar to Guido Hooiveld ★ 2.9k
Teacher to Aaron Lun ★ 26k
Popular Question to Henrik Bengtsson ★ 2.4k
Locations • All
Austria, 2 minutes ago
United States, 4 minutes ago
United States, 19 minutes ago
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia, 45 minutes ago
Australia/Melbourne/Olivia Newton-John Cancer Research Institute, 47 minutes ago
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