how to output and get the normalization gene expression data (similar to the FPKM gene expression data) from reads count data by DESeq2 and edgeR?
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ZihaoXing • 0
@zihaoxing-13254
Last seen 2.9 years ago

  the RNAseq read counts data can do the different RNAseq expression by the DESeq2 and edgeR , but i also want to get the normalization gene expression data such as FPKM data ,and do the later clinical survival analysis with gene expression. can i get the normalization gene expression by edgeR and DESeq2 data.

deseq2 edger fpkm counts TCGA • 461 views
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@gordon-smyth
Last seen 3 hours ago
WEHI, Melbourne, Australia

See edgeR's rpkm() function.

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thanks Gordon Smyth ,i try to use the rpkm() function to see the transform results. thanks your advice. hope you work happy and well on your research.

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