Question: how to output and get the normalization gene expression data (similar to the FPKM gene expression data) from reads count data by DESeq2 and edgeR?
0
gravatar for ZihaoXing
8 months ago by
ZihaoXing0
ZihaoXing0 wrote:

  the RNAseq read counts data can do the different RNAseq expression by the DESeq2 and edgeR , but i also want to get the normalization gene expression data such as FPKM data ,and do the later clinical survival analysis with gene expression. can i get the normalization gene expression by edgeR and DESeq2 data.

edger deseq2 counts tcga fpkm • 197 views
ADD COMMENTlink modified 8 months ago by Gordon Smyth37k • written 8 months ago by ZihaoXing0
Answer: how to output and get the normalization gene expression data (similar to the FPK
1
gravatar for Gordon Smyth
8 months ago by
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth37k wrote:

See edgeR's rpkm() function.

ADD COMMENTlink written 8 months ago by Gordon Smyth37k

thanks Gordon Smyth ,i try to use the rpkm() function to see the transform results. thanks your advice. hope you work happy and well on your research.

ADD REPLYlink written 8 months ago by ZihaoXing0
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