how to output and get the normalization gene expression data (similar to the FPKM gene expression data) from reads count data by DESeq2 and edgeR?

Question: how to output and get the normalization gene expression data (similar to the FPKM gene expression data) from reads count data by DESeq2 and edgeR?

6 months ago by

ZihaoXing • 0

ZihaoXing • 0 wrote:

the RNAseq read counts data can do the different RNAseq expression by the DESeq2 and edgeR , but i also want to get the normalization gene expression data such as FPKM data ,and do the later clinical survival analysis with gene expression. can i get the normalization gene expression by edgeR and DESeq2 data.

edger deseq2 counts tcga fpkm • 164 views

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modified 5 months ago by Gordon Smyth ♦ 36k • written 6 months ago by ZihaoXing • 0

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