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Question: how to output and get the normalization gene expression data (similar to the FPKM gene expression data) from reads count data by DESeq2 and edgeR?
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gravatar for ZihaoXing
25 days ago by
ZihaoXing0
ZihaoXing0 wrote:

  the RNAseq read counts data can do the different RNAseq expression by the DESeq2 and edgeR , but i also want to get the normalization gene expression data such as FPKM data ,and do the later clinical survival analysis with gene expression. can i get the normalization gene expression by edgeR and DESeq2 data.

ADD COMMENTlink modified 25 days ago by Gordon Smyth35k • written 25 days ago by ZihaoXing0
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gravatar for Gordon Smyth
25 days ago by
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth35k wrote:

See edgeR's rpkm() function.

ADD COMMENTlink written 25 days ago by Gordon Smyth35k

thanks Gordon Smyth ,i try to use the rpkm() function to see the transform results. thanks your advice. hope you work happy and well on your research.

ADD REPLYlink written 25 days ago by ZihaoXing0
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