Biostar Fpkm

Showing : fpkm • reset

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1.2k

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RUVSeq FPKM removeBatchEffect RNA-seq sva

updated 6 months ago by ATpoint ★ 1.4k • written 16 months ago by Xiaojie Cheng • 0

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1.5k

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DESEQ2 fpkm rpkm tpm

10 months ago Sandhiya • 0

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387

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dge fpkm rna-seq

updated 14 months ago by Kevin Blighe 3.6k • written 14 months ago by lkianmehr • 0

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500

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tximport rsem transcript abundance TPM FPKM

updated 21 months ago by Michael Love 37k • written 23 months ago by m.metsger • 0

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5.6k

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counts fpkm fpkm() normalization deseq2

updated 3.4 years ago by Ahmed Alhendi • 0 • written 3.7 years ago by chiara.facciotto • 0

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2.7k

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edgeR pvalue qvalue fpkm differential gene expression

updated 3.8 years ago by Steve Lianoglou 13k • written 3.8 years ago by Harrisonesmith • 0

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879

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deseq2 edger fpkm counts fc

updated 3.9 years ago by Gordon Smyth 46k • written 3.9 years ago by ZihaoXing • 0

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603

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deseq2 edger fpkm counts TCGA

updated 3.9 years ago by Gordon Smyth 46k • written 3.9 years ago by ZihaoXing • 0

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931

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GenomicFeatures TPM FPKM lncRNA

4.2 years ago Ina Hoeschele ▴ 620

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3.7k

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FPKM

4.8 years ago Nithisha ▴ 10

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2.1k

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deseq2 fpkm

updated 13 months ago by Michael Love 37k • written 5.0 years ago by rhart • 0

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794

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r fpkm bioinformatics

updated 5.8 years ago by Aaron Lun ★ 27k • written 5.8 years ago by fromhj304 ▴ 10

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1.9k

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edgeR logFC FPKM

updated 5.8 years ago by Gordon Smyth 46k • written 5.8 years ago by Sara ▴ 10

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4.7k

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limma voom voom rsem fpkm

5.9 years ago komal.rathi ▴ 100

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1.4k

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deseq2 cummerbund rlog fpkm clustering

6.6 years ago Jon Bråte ▴ 190

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3.4k

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deseq2 fpkm

updated 7.0 years ago by Michael Love 37k • written 7.0 years ago by ashley.doane ▴ 20

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1.7k

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count rnaseq rpkm fpkm edgeR

updated 7.3 years ago by Gordon Smyth 46k • written 7.3 years ago by thibault.lorin ▴ 10

17 results • Page 1 of 1

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Comment: Data input for aracne2regulon function in viper package by xlal • 0

You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…

Comment: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 1000

All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…

Answer: how to use Rsamtools to parse extra fields from STAR alignment by Martin Morgan 25k

The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Delta._.43 ▴ 10

Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Alejandro Reyes ★ 1.8k

Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…

Votes

Answer: spot- vs cell-level data access

Answer: unable to install.packages("spatialLIBD")

Comment: unable to install.packages("spatialLIBD")

error running UniProt.ws

Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU

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Popular Question to Alejandro Reyes ★ 1.8k

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Scholar to voogd.o ▴ 10