Question: Error installing EWCE package
0
gravatar for avoda
12 months ago by
avoda0
avoda0 wrote:
Hi! Total noob here, can anybody help me debug this? I'm trying to install EWCE (https://bioc.ism.ac.jp/packages/3.4/bioc/html/EWCE.html) and failed on two different machines (RStudio Server Pro @ my local HPC & RStudio on my PC).

> source("http://bioconductor.org/biocLite.R")
Bioconductor version 3.7 (BiocInstaller 1.30.0), ?biocLite for help
> biocLite("EWCE")
BioC_mirror: https://bioc.ism.ac.jp
Using Bioconductor 3.7 (BiocInstaller 1.30.0), R 3.5.0 (2018-04-23).
Installing package(s) ‘EWCE’
installation path not writeable, unable to update packages: foreign, mgcv
Warning message:
package ‘EWCE’ is not available (for R version 3.5.0)

 

I've also tried:

BiocManager::install("EWCE")

 

but it gives me the same error :(

ADD COMMENTlink modified 12 months ago by Mike Smith4.0k • written 12 months ago by avoda0

Nevermind, managed to install it directly from github this way:

install.packages("devtools")
library(devtools)
install_github("NathanSkene/EWCE")

ADD REPLYlink written 12 months ago by avoda0
Answer: Error installing EWCE package
1
gravatar for Mike Smith
12 months ago by
Mike Smith4.0k
EMBL Heidelberg / de.NBI
Mike Smith4.0k wrote:

EWCE was removed from Bioconductor with the release of version 3.7 (https://bioconductor.org/about/removed-packages/)

If you still want to use it, you can either download the source tar.gz from one of the older BioC release pages, or try the Github repository you can find via Google search - but I presume there was a reason the package was retired.

ADD COMMENTlink written 12 months ago by Mike Smith4.0k

Thank you! ^_^

managed to install it directly from github this way:

install.packages("devtools")
library(devtools)
install_github("NathanSkene/EWCE")

ADD REPLYlink written 12 months ago by avoda0

I'm the developer of EWCE. It was depreciated from bioconductor just because it's easier to keep it updated through github. I recommend doing as others have suggested here arnd using the version available through install_github("NathanSkene/EWCE"). One day I'll try and get it back up on bioconductor.

ADD REPLYlink written 10 months ago by natske10
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