Can not install packages
1
0
Entering edit mode
@mithil-gaikwad-16865
Last seen 5.8 years ago
Tezpur University, India

>install.packages("ballgown")
Installing package into ‘/home/mithil/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
  package ‘ballgown’ is not available (for R version 3.4.4)

> install.packages("genefilter")
Installing package into ‘/home/mithil/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
  package ‘genefilter’ is not available (for R version 3.4.4)

 

> devtools::install_github('alyssafrazee/RSkittleBrewer')
Error in curl::curl_fetch_memory(url, handle = h) :
  Failed to connect to api.github.com port 443: Connection timed out

 

> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS

Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1

locale:
 [1] LC_CTYPE=en_IN.UTF-8       LC_NUMERIC=C               LC_TIME=en_IN.UTF-8       
 [4] LC_COLLATE=en_IN.UTF-8     LC_MONETARY=en_IN.UTF-8    LC_MESSAGES=en_IN.UTF-8   
 [7] LC_PAPER=en_IN.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_IN.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.28.0

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.19      rstudioapi_0.8    magrittr_1.5      usethis_1.4.0    
 [5] devtools_2.0.1    pkgload_1.0.2     R6_2.3.0          rlang_0.3.0.1    
 [9] tools_3.4.4       pkgbuild_1.0.2    sessioninfo_1.1.1 cli_1.0.1        
[13] withr_2.1.2       remotes_2.0.2     assertthat_0.2.0  digest_0.6.18    
[17] rprojroot_1.3-2   crayon_1.3.4      processx_3.2.0    callr_3.0.0      
[21] base64enc_0.1-3   fs_1.2.6          ps_1.2.1          curl_3.1         
[25] glue_1.3.0        memoise_1.1.0     compiler_3.4.4    desc_1.2.0       
[29] backports_1.1.2   prettyunits_1.0.2

 

 

What could be the problem?

ballgown genefilter RskittleBrewer • 2.3k views
ADD COMMENT
0
Entering edit mode
@lluis-revilla-sancho
Last seen 3 days ago
European Union

To install packages from Bioconductor you need the BiocManager package:

install.packages("BiocManager")
BiocManager::install(c("ballgown", "genefilter"))

However, to get the latest packages from Bioconductor you'll need R version 3.5 not the R version 3.4.4 you are using.

ADD COMMENT

Login before adding your answer.

Traffic: 561 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6