Showing : genefilter • reset
0
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142
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Error using simpleaffy
software error simpleaffy genefilter
updated 21 months ago by 57k • written 21 months ago by • 0
8
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10
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583
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma microarray genefilter deseq2
24 months ago Jurat Shahidin ▴ 70
0
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6
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519
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Save ExpressionSet to csv file with columns and rows headers
microarray genefilter
updated 2.0 years ago by 57k • written 2.0 years ago by ▴ 10
0
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1
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821
views
genefilter Package not available for R 3.5.2
genefilter
2.4 years ago radhikasundar520 • 0
0
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1
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1.1k
views
Can not install packages
ballgown genefilter RskittleBrewer
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
0
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5
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794
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor brainarray genefilter oligo
updated 3.0 years ago by 57k • written 3.0 years ago by • 0
0
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1
reply
561
views
Unable to compile genefilter package
bioconductor genefilter compile
updated 3.3 years ago by 57k • written 3.3 years ago by • 0
0
votes
3
replies
967
views
error in filtering genes with rowVars(gexpr(bg_chrX)) >1
genefilter ballgown
updated 3.4 years ago by • 0 • written 3.9 years ago by • 0
0
votes
1
reply
749
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
deseq2 filter genefilter
updated 3.6 years ago by 33k • written 3.6 years ago by • 0
1
vote
4
replies
988
views
cran check shows that genefilter is not available
genefilter
3.6 years ago jinkaixiu ▴ 10
1
vote
3
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633
views
Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
3.7 years ago lirongrossmann ▴ 60
1
vote
5
replies
589
views
error when trying to apply the specific gene filter.
genefilter
3.9 years ago DataFanatic • 0
6
votes
5
replies
11k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 4.4 years ago by 25k • written 4.4 years ago by ▴ 10
1
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4
replies
838
views
Error in the package of "genefilter" "nsFilter"
genefilter
updated 4.7 years ago by 57k • written 4.7 years ago by ▴ 20
3
votes
5
replies
1.1k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 4.7 years ago by 25k • written 4.7 years ago by ▴ 20
3
votes
1
reply
524
views
Is it valid to use only genes of interest before eBayes step in limma?
limma genefilter
updated 5.0 years ago by ★ 26k • written 5.0 years ago by • 0
6
votes
6
replies
1.0k
views
genefilter filtered out 60% of the original genes?
genefilter edgeR
updated 5.1 years ago by ▴ 170 • written 5.1 years ago by ▴ 20
1
vote
1
reply
969
views
Error using nsFilter() Error in (function (classes, fdef, mtable) unable to find an inherited method for function columns for signature function
genefilter
5.1 years ago Lucy • 0
2
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1
reply
857
views
Filtering array data with nsFilter
genefilter nsFilter
updated 5.1 years ago by 43k • written 5.1 years ago by • 0
0
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1
reply
641
views
Really weird results when I filter this new data that I have, script has worked on two previous data sets.
microarray limma genefilter
updated 5.3 years ago by 57k • written 5.3 years ago by • 0
0
votes
1
reply
705
views
nsFilter not filtering out all of the normgene->exon.
genefilter affymetrix microarrays
updated 5.3 years ago by 57k • written 5.3 years ago by • 0
2
votes
2
replies
731
views
I'm looking for a filtering method that it does't use genewise variances
genefilter liimma microarray
updated 5.5 years ago by 13k • written 5.5 years ago by ▴ 20
4
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4
replies
1.3k
views
Suggestions for non-specific filtering criteria with limma
limma genefilter
updated 5.5 years ago by 13k • written 5.5 years ago by ▴ 10
4
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4
replies
1.6k
views
DEXSeq and Independent filtering
dexseq deseq2 genefilter
updated 5.6 years ago by 13k • written 5.6 years ago by ▴ 20
2
votes
12
replies
1.3k
views
I want to order genes in GO groups
gene ontology genefilter
updated 5.7 years ago by ▴ 340 • written 5.8 years ago by ▴ 10
0
votes
2
replies
1.9k
views
Error with oligo: environmentIsLocked
oligo bioconductor genefilter
updated 5.8 years ago by 57k • written 5.8 years ago by ▴ 10
0
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1
reply
834
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 6.1 years ago by • 0 • written 14.4 years ago by ▴ 170
2
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7
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950
views
why genefilter does not work for me ?
R microarray genefilter
6.3 years ago Nemo ▴ 80
4
votes
4
replies
1.7k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter R bioconductor differential gene expression
updated 6.4 years ago by 43k • written 6.4 years ago by ▴ 780
7
votes
5
replies
1.2k
views
Adjusted P values
limma genefilter
updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 10
2
votes
4
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1.0k
views
filter.log in nsFilter function (package genefilter) gives null value
genefilter
updated 6.7 years ago by 57k • written 6.7 years ago by ▴ 10
1
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3
replies
6.4k
views
genefilter installation error
genefilter genefilter
updated 6.8 years ago by ▴ 150 • written 6.8 years ago by ▴ 10
0
votes
1
reply
643
views
selection of probes, probesets mapping to the same gene
genefilter genefilter
updated 6.9 years ago by 13k • written 6.9 years ago by ▴ 680
0
votes
2
replies
695
views
Fwd: adjusted P-values
Cancer genefilter Cancer genefilter
updated 7.1 years ago by ★ 4.2k • written 7.1 years ago by ▴ 190
0
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0
replies
510
views
adjusted P-values
genefilter genefilter
7.1 years ago Guest User ★ 12k
0
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1
reply
2.8k
views
error in installing \"genefilter\"
genefilter genefilter
updated 7.1 years ago by 57k • written 7.1 years ago by ★ 12k
1
vote
1
reply
1.3k
views
Rosetta Resolver-like error-weighted ANOVAs in Bioconductor
Microarray genefilter affy Microarray genefilter affy
updated 7.3 years ago by 7.6k • written 7.3 years ago by ▴ 10
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4
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1.2k
views
genefilter kOverA filter by range
genefilter genefilter
updated 7.4 years ago by 57k • written 7.4 years ago by ▴ 220
0
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1
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753
views
Fwd: [devteam-bioc] information about genefilter package
Microarray genefilter limma Microarray genefilter limma
updated 7.6 years ago by 57k • written 7.6 years ago by 15k
0
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3
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1.4k
views
Problem installing genefilter (Ubuntu 12.04; Bioconductor v2.12)
genefilter genefilter
updated 7.9 years ago by 57k • written 7.9 years ago by ★ 12k
0
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9
replies
968
views
Error in calculating P-values with Genefilter function
genefilter genefilter
updated 8.0 years ago by 57k • written 8.0 years ago by ★ 12k
0
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2
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1.8k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 8.2 years ago by 25k • written 8.2 years ago by ▴ 30
0
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0
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630
views
analysis of HuGene2.0-st array affymetrix -aroma package
genefilter genefilter
8.2 years ago Andreia Fonseca ▴ 810
0
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1
reply
680
views
Help with installing genefilter -- "installed directory not writable"
Microarray genefilter Microarray genefilter
updated 8.7 years ago by ★ 8.2k • written 8.7 years ago by ▴ 10
0
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3
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942
views
Non-Specific Filtering with "nsFilter" Question
probe genefilter PROcess probe genefilter PROcess
updated 9.0 years ago by 57k • written 9.0 years ago by ▴ 160
0
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3
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1.2k
views
How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray Annotation Normalization GO probe genefilter affy limma oligo Microarray GO
updated 9.1 years ago by ▴ 190 • written 9.1 years ago by 57k
0
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1
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714
views
How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray Normalization probe genefilter limma oligo Microarray Normalization probe
updated 9.1 years ago by 57k • written 9.1 years ago by ▴ 190
0
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1
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725
views
statistical test help -RT-PCR data?
genefilter limma genefilter limma
updated 9.3 years ago by ▴ 300 • written 9.3 years ago by ▴ 30
1
vote
1
reply
1.5k
views
Removing probes with low variance across samples (Infinium 450k)
probe genefilter probe genefilter
updated 9.4 years ago by ★ 4.2k • written 9.4 years ago by ▴ 400
0
votes
3
replies
758
views
selecting/filtering probesets from exprSet object prior to diff. exp. anal.
Preprocessing genefilter limma Preprocessing genefilter limma
updated 9.6 years ago by 57k • written 9.6 years ago by ▴ 40
50 results • Page 1 of 1
Recent ...
Replies
Answer: Unable to install bioconductor packages by Mike Smith ★ 5.0k
There looks like maybe two different problems here. Let's try fixing the installation of **BiocManager** first, and then maybe everything …
Comment: No counts, just fold change data by Manal • 0
Thank you for that. I did now. I am just hesitant if the values logFC logCPM LR PValue FDR coming out from EdgeR are the valuable, but the …
Comment: No counts, just fold change data by Manal • 0
No, not submitted in any database, and not sure if it is LogFC, they only mentioned fold change above the threshold 1.5. The highest value …
Comment: PCA and heatmaps: most variable genes selection by Clara • 0
Thank you!
Answer: PCA and heatmaps: most variable genes selection by Michael Love 33k
We focus on the top genes by variance (in transformed space) because this focuses the plot on genes with most differences. This is kind of …
Votes
Comment: Confusion using edgeR and spline-fitted data
Interpretation of confidence interval values for logFC returned from topTable function in limma with microarray dataset
C: limma report logFC confidence interval?
Answer: No counts, just fold change data
Answer: No counts, just fold change data
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