Showing : genefilter • reset
10
votes
20
replies
5.1k
views
Macbook M1 install genefilter failed
DESeq2 m1 macbook genefilter
updated 4 months ago by • 0 • written 9 months ago by ▴ 80
0
votes
1
reply
198
views
collided row names in heatmap.2
heatmap.2 genefilter deseq2
updated 9 months ago by 59k • written 9 months ago by • 0
0
votes
2
replies
471
views
genefilter not available for R v4.1/arm64
DESeq2 genefilter
10 months ago jeremymsimon • 0
0
votes
1
reply
282
views
Error using simpleaffy
software error simpleaffy genefilter
updated 2.7 years ago by 59k • written 2.7 years ago by • 0
8
votes
10
replies
1.0k
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma microarray genefilter deseq2
2.9 years ago Jurat Shahidin ▴ 70
0
votes
6
replies
895
views
Save ExpressionSet to csv file with columns and rows headers
microarray genefilter
updated 3.0 years ago by 59k • written 3.0 years ago by ▴ 10
0
votes
1
reply
979
views
genefilter Package not available for R 3.5.2
genefilter
3.4 years ago radhikasundar520 • 0
0
votes
1
reply
1.4k
views
Can not install packages
ballgown genefilter RskittleBrewer
updated 3.5 years ago by ★ 5.5k • written 3.5 years ago by • 0
0
votes
5
replies
1.0k
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor brainarray genefilter oligo
updated 3.9 years ago by 59k • written 4.0 years ago by • 0
0
votes
1
reply
980
views
Unable to compile genefilter package
bioconductor genefilter compile
updated 4.2 years ago by 59k • written 4.2 years ago by • 0
0
votes
3
replies
1.2k
views
error in filtering genes with rowVars(gexpr(bg_chrX)) >1
genefilter ballgown
updated 4.3 years ago by • 0 • written 4.8 years ago by • 0
0
votes
1
reply
958
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
deseq2 filter genefilter
updated 4.5 years ago by 36k • written 4.6 years ago by • 0
1
vote
4
replies
1.3k
views
cran check shows that genefilter is not available
genefilter
4.5 years ago jinkaixiu ▴ 10
1
vote
3
replies
763
views
Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
4.7 years ago lirongrossmann ▴ 60
1
vote
5
replies
746
views
error when trying to apply the specific gene filter.
genefilter
4.8 years ago DataFanatic • 0
6
votes
5
replies
12k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 10
1
vote
4
replies
1000
views
Error in the package of "genefilter" "nsFilter"
genefilter
updated 5.6 years ago by 59k • written 5.6 years ago by ▴ 20
3
votes
5
replies
1.6k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 5.6 years ago by 25k • written 5.6 years ago by ▴ 20
3
votes
1
reply
684
views
Is it valid to use only genes of interest before eBayes step in limma?
limma genefilter
updated 5.9 years ago by ★ 27k • written 5.9 years ago by • 0
6
votes
6
replies
1.3k
views
genefilter filtered out 60% of the original genes?
genefilter edgeR
updated 6.0 years ago by ▴ 170 • written 6.0 years ago by ▴ 20
1
vote
1
reply
1.1k
views
Error using nsFilter() Error in (function (classes, fdef, mtable) unable to find an inherited method for function columns for signature function
genefilter
6.0 years ago Lucy • 0
2
votes
1
reply
1.0k
views
Filtering array data with nsFilter
genefilter nsFilter
updated 6.1 years ago by 45k • written 6.1 years ago by • 0
0
votes
1
reply
717
views
Really weird results when I filter this new data that I have, script has worked on two previous data sets.
microarray limma genefilter
updated 6.2 years ago by 59k • written 6.2 years ago by • 0
0
votes
1
reply
810
views
nsFilter not filtering out all of the normgene->exon.
genefilter affymetrix microarrays
updated 6.3 years ago by 59k • written 6.3 years ago by • 0
2
votes
2
replies
856
views
I'm looking for a filtering method that it does't use genewise variances
genefilter liimma microarray
updated 6.4 years ago by 13k • written 6.4 years ago by ▴ 20
4
votes
4
replies
1.5k
views
Suggestions for non-specific filtering criteria with limma
limma genefilter
updated 6.4 years ago by 13k • written 6.4 years ago by ▴ 10
4
votes
4
replies
1.9k
views
DEXSeq and Independent filtering
dexseq deseq2 genefilter
updated 6.5 years ago by 13k • written 6.5 years ago by ▴ 20
2
votes
12
replies
1.5k
views
I want to order genes in GO groups
gene ontology genefilter
updated 6.7 years ago by ▴ 360 • written 6.7 years ago by ▴ 10
0
votes
2
replies
2.2k
views
Error with oligo: environmentIsLocked
oligo bioconductor genefilter
updated 6.7 years ago by 59k • written 6.7 years ago by ▴ 10
0
votes
1
reply
999
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 7.0 years ago by • 0 • written 15.4 years ago by ▴ 170
2
votes
7
replies
1.1k
views
why genefilter does not work for me ?
R microarray genefilter
7.3 years ago Nemo ▴ 80
4
votes
4
replies
2.0k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter R bioconductor differential gene expression
updated 7.4 years ago by 45k • written 7.4 years ago by ▴ 780
7
votes
5
replies
1.3k
views
Adjusted P values
limma genefilter
updated 7.5 years ago by 45k • written 7.5 years ago by ▴ 10
2
votes
4
replies
1.2k
views
filter.log in nsFilter function (package genefilter) gives null value
genefilter
updated 7.6 years ago by 59k • written 7.6 years ago by ▴ 10
1
vote
3
replies
7.1k
views
genefilter installation error
genefilter genefilter
updated 7.7 years ago by ▴ 150 • written 7.8 years ago by ▴ 10
0
votes
1
reply
748
views
selection of probes, probesets mapping to the same gene
genefilter genefilter
updated 7.8 years ago by 13k • written 7.8 years ago by ▴ 680
0
votes
2
replies
953
views
Fwd: adjusted P-values
Cancer genefilter Cancer genefilter
updated 8.0 years ago by ★ 4.2k • written 8.0 years ago by ▴ 190
0
votes
0
replies
588
views
adjusted P-values
genefilter genefilter
8.0 years ago Guest User ★ 12k
0
votes
1
reply
3.4k
views
error in installing \"genefilter\"
genefilter genefilter
updated 8.1 years ago by 59k • written 8.1 years ago by ★ 12k
1
vote
1
reply
1.6k
views
Rosetta Resolver-like error-weighted ANOVAs in Bioconductor
Microarray genefilter affy Microarray genefilter affy
updated 8.2 years ago by 7.8k • written 8.2 years ago by ▴ 10
0
votes
4
replies
1.4k
views
genefilter kOverA filter by range
genefilter genefilter
updated 8.3 years ago by 59k • written 8.3 years ago by ▴ 220
0
votes
1
reply
851
views
Fwd: [devteam-bioc] information about genefilter package
Microarray genefilter limma Microarray genefilter limma
updated 8.6 years ago by 59k • written 8.6 years ago by 15k
0
votes
3
replies
1.5k
views
Problem installing genefilter (Ubuntu 12.04; Bioconductor v2.12)
genefilter genefilter
updated 8.8 years ago by 59k • written 8.8 years ago by ★ 12k
0
votes
9
replies
1.1k
views
Error in calculating P-values with Genefilter function
genefilter genefilter
updated 9.0 years ago by 59k • written 9.0 years ago by ★ 12k
0
votes
2
replies
2.0k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 9.1 years ago by 25k • written 9.1 years ago by ▴ 30
0
votes
0
replies
709
views
analysis of HuGene2.0-st array affymetrix -aroma package
genefilter genefilter
9.2 years ago Andreia Fonseca ▴ 810
0
votes
1
reply
818
views
Help with installing genefilter -- "installed directory not writable"
Microarray genefilter Microarray genefilter
updated 9.6 years ago by ★ 8.2k • written 9.6 years ago by ▴ 10
0
votes
3
replies
1.2k
views
Non-Specific Filtering with "nsFilter" Question
probe genefilter PROcess probe genefilter PROcess
updated 9.9 years ago by 59k • written 9.9 years ago by ▴ 160
0
votes
3
replies
1.4k
views
How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray Annotation Normalization GO probe genefilter affy limma oligo Microarray GO
updated 10.0 years ago by ▴ 190 • written 10.0 years ago by 59k
0
votes
1
reply
943
views
How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray Normalization probe genefilter limma oligo Microarray Normalization probe
updated 10.0 years ago by 59k • written 10.0 years ago by ▴ 190
50 results • Page 1 of 1
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Comment: performing the differential binding in ChIP-seq by ATpoint ★ 1.2k
Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2 by Ekta • 0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
Comment: how to make a group to apply the data to CAMERA by Akira • 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
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