Showing : genefilter • reset
1
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3
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1.6k
views
DESeq2/genefilter compatibility with R 4.2.2
DESeq2 genefilter
6 months ago Morgane ▴ 10
1
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1
reply
391
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Weight Array Quality before of after applying variance filtering?
limma arrays genefilter
updated 10 months ago by 63k • written 10 months ago by ▴ 40
0
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0
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327
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Cannot Install genefilter
genefilter
10 months ago Francis • 0
10
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23
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11k
views
Macbook M1 install genefilter failed
DESeq2 m1 macbook genefilter
22 months ago • updated 6 months ago soda ▴ 80
0
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1
reply
415
views
collided row names in heatmap.2
heatmap.2 genefilter deseq2
updated 21 months ago by 63k • written 21 months ago by • 0
0
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2
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897
views
genefilter not available for R v4.1/arm64
DESeq2 genefilter
22 months ago jeremymsimon ▴ 20
0
votes
1
reply
449
views
Error using simpleaffy
software error simpleaffy genefilter
updated 3.8 years ago by 63k • written 3.8 years ago by • 0
9
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10
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1.6k
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma microarray genefilter deseq2
4.0 years ago • updated 3.9 years ago Jurat Shahidin ▴ 80
0
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6
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1.3k
views
Save ExpressionSet to csv file with columns and rows headers
microarray genefilter
updated 4.0 years ago by 63k • written 4.0 years ago by ▴ 10
0
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1
reply
1.1k
views
genefilter Package not available for R 3.5.2
genefilter
4.4 years ago radhikasundar520 • 0
0
votes
1
reply
1.8k
views
Can not install packages
ballgown genefilter RskittleBrewer
updated 4.6 years ago by ★ 6.0k • written 4.6 years ago by • 0
0
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5
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1.3k
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor brainarray genefilter oligo
updated 5.0 years ago by 63k • written 5.0 years ago by • 0
0
votes
1
reply
1.2k
views
Unable to compile genefilter package
bioconductor genefilter compile
updated 5.3 years ago by 63k • written 5.3 years ago by • 0
0
votes
3
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1.4k
views
error in filtering genes with rowVars(gexpr(bg_chrX)) >1
genefilter ballgown
updated 5.4 years ago by • 0 • written 5.8 years ago by • 0
0
votes
1
reply
1.3k
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
deseq2 filter genefilter
updated 5.5 years ago by 40k • written 5.6 years ago by • 0
1
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4
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1.5k
views
cran check shows that genefilter is not available
genefilter
5.5 years ago jinkaixiu ▴ 10
1
vote
3
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1.1k
views
Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
5.7 years ago lirongrossmann ▴ 80
1
vote
5
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932
views
error when trying to apply the specific gene filter.
genefilter
5.9 years ago • updated 5.8 years ago DataFanatic ▴ 10
6
votes
5
replies
13k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 10
1
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4
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1.1k
views
Error in the package of "genefilter" "nsFilter"
genefilter
updated 6.6 years ago by 63k • written 6.6 years ago by ▴ 20
3
votes
5
replies
1.8k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 20
3
votes
1
reply
816
views
Is it valid to use only genes of interest before eBayes step in limma?
limma genefilter
updated 6.9 years ago by ★ 28k • written 6.9 years ago by • 0
6
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6
replies
1.5k
views
genefilter filtered out 60% of the original genes?
genefilter edgeR
updated 7.1 years ago by ▴ 180 • written 7.1 years ago by ▴ 20
1
vote
1
reply
1.3k
views
Error using nsFilter() Error in (function (classes, fdef, mtable) unable to find an inherited method for function columns for signature function
genefilter
7.1 years ago Lucy • 0
2
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1
reply
1.2k
views
Filtering array data with nsFilter
genefilter nsFilter
updated 7.1 years ago by 47k • written 7.1 years ago by • 0
0
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1
reply
811
views
Really weird results when I filter this new data that I have, script has worked on two previous data sets.
microarray limma genefilter
updated 7.2 years ago by 63k • written 7.2 years ago by • 0
0
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1
reply
946
views
nsFilter not filtering out all of the normgene->exon.
genefilter affymetrix microarrays
updated 7.3 years ago by 63k • written 7.3 years ago by • 0
2
votes
2
replies
1.0k
views
I'm looking for a filtering method that it does't use genewise variances
genefilter liimma microarray
updated 7.4 years ago by 13k • written 7.4 years ago by ▴ 20
4
votes
4
replies
1.8k
views
Suggestions for non-specific filtering criteria with limma
limma genefilter
updated 7.4 years ago by 13k • written 7.5 years ago by ▴ 10
4
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4
replies
2.1k
views
DEXSeq and Independent filtering
dexseq deseq2 genefilter
updated 7.5 years ago by 13k • written 7.5 years ago by ▴ 20
2
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12
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1.8k
views
I want to order genes in GO groups
gene ontology genefilter
updated 7.7 years ago by ▴ 360 • written 7.7 years ago by ▴ 10
0
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2
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2.6k
views
Error with oligo: environmentIsLocked
oligo bioconductor genefilter
updated 7.8 years ago by 63k • written 7.8 years ago by ▴ 10
0
votes
1
reply
1.2k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 8.0 years ago by • 0 • written 16.4 years ago by ▴ 170
2
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7
replies
1.3k
views
why genefilter does not work for me ?
R microarray genefilter
8.3 years ago Nemo ▴ 80
4
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4
replies
2.3k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter R bioconductor differential gene expression
updated 8.4 years ago by 47k • written 8.4 years ago by ▴ 810
7
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5
replies
1.6k
views
Adjusted P values
limma genefilter
updated 8.6 years ago by 47k • written 8.6 years ago by ▴ 10
2
votes
4
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1.4k
views
filter.log in nsFilter function (package genefilter) gives null value
genefilter
updated 8.7 years ago by 63k • written 8.7 years ago by ▴ 10
1
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3
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8.3k
views
genefilter installation error
genefilter genefilter
updated 8.8 years ago by ▴ 150 • written 8.8 years ago by ▴ 10
0
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1
reply
891
views
selection of probes, probesets mapping to the same gene
genefilter genefilter
updated 8.8 years ago by 13k • written 8.9 years ago by ▴ 680
0
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2
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1.1k
views
Fwd: adjusted P-values
Cancer genefilter Cancer genefilter
updated 9.1 years ago by ★ 4.2k • written 9.1 years ago by ▴ 190
0
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0
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731
views
adjusted P-values
genefilter genefilter
9.1 years ago Guest User ★ 12k
0
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1
reply
3.7k
views
error in installing \"genefilter\"
genefilter genefilter
updated 9.1 years ago by 63k • written 9.1 years ago by ★ 12k
1
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1
reply
1.8k
views
Rosetta Resolver-like error-weighted ANOVAs in Bioconductor
Microarray genefilter affy Microarray genefilter affy
updated 9.2 years ago by 7.8k • written 9.2 years ago by ▴ 10
0
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4
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1.7k
views
genefilter kOverA filter by range
genefilter genefilter
updated 9.4 years ago by 63k • written 9.4 years ago by ▴ 220
0
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1
reply
957
views
Fwd: [devteam-bioc] information about genefilter package
Microarray genefilter limma Microarray genefilter limma
updated 9.6 years ago by 63k • written 9.6 years ago by 16k
0
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3
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1.7k
views
Problem installing genefilter (Ubuntu 12.04; Bioconductor v2.12)
genefilter genefilter
updated 9.8 years ago by 63k • written 9.8 years ago by ★ 12k
0
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9
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1.3k
views
Error in calculating P-values with Genefilter function
genefilter genefilter
updated 10.0 years ago by 63k • written 10.0 years ago by ★ 12k
0
votes
2
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2.2k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 10.2 years ago by 25k • written 10.2 years ago by ▴ 30
0
votes
0
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801
views
analysis of HuGene2.0-st array affymetrix -aroma package
genefilter genefilter
10.2 years ago Andreia Fonseca ▴ 810
0
votes
1
reply
935
views
Help with installing genefilter -- "installed directory not writable"
Microarray genefilter Microarray genefilter
updated 10.6 years ago by ★ 8.2k • written 10.6 years ago by ▴ 10
50 results • Page 1 of 1
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Replies
Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10
@gordonsmyth thank you, yes, please find the targets frame below. Basically, I want to create a design matrix and binarize by 0 and 1 to be…
Comment: WGCNA: many over and under-expressed features in modules of a signed network by andres.firrincieli ▴ 50
answered in Biostars: https://www.biostars.org/p/9564943/
Comment: Multitasking and Rbwa by Jean-Philippe Fortin • 0
Indeed, one can pass additional arguments to the `bwa_aln` function in `Rbwa`: bwa_aln(type="single", index_prefix=index_pr…
Comment: biomaRt error: database disk image is malformed by Emile • 0
UNBORKING the bioMaRt cache `biomaRt::biomartCacheClear()` also fixes the troubles with PANTHER.db installation which have also something t…
Answer: Proteomics data with NA values by Laurent Gatto 1.6k
- First, you need to assess how many missing values you have. - I would recommend not to impute your data by 0 (or any arbitrary small …
Votes
Answer: Question on constructing design matrix and defining contrasts for analysis
WGCNA: many over and under-expressed features in modules of a signed network
Comment: WGCNA: many over and under-expressed features in modules of a signed network
Answer: DESeq2 or edgeR for Presence and Absence of Proteins
Answer: Normalized counts from LRT or Wald test?
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