Showing : genefilter • reset
0
votes
1
reply
86
views
collided row names in heatmap.2
heatmap.2 genefilter deseq2
updated 5 weeks ago by 58k • written 5 weeks ago by • 0
4
votes
9
replies
668
views
Macbook M1 install genefilter failed
DESeq2 m1 macbook genefilter
updated 19 hours ago by 34k • written 7 weeks ago by ▴ 40
0
votes
2
replies
184
views
genefilter not available for R v4.1/arm64
DESeq2 genefilter
9 weeks ago jeremymsimon • 0
0
votes
1
reply
190
views
Error using simpleaffy
software error simpleaffy genefilter
updated 2.1 years ago by 58k • written 2.1 years ago by • 0
8
votes
10
replies
672
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma microarray genefilter deseq2
2.2 years ago Jurat Shahidin ▴ 70
0
votes
6
replies
620
views
Save ExpressionSet to csv file with columns and rows headers
microarray genefilter
updated 2.3 years ago by 58k • written 2.3 years ago by ▴ 10
0
votes
1
reply
875
views
genefilter Package not available for R 3.5.2
genefilter
2.7 years ago radhikasundar520 • 0
0
votes
1
reply
1.2k
views
Can not install packages
ballgown genefilter RskittleBrewer
updated 2.9 years ago by ★ 5.1k • written 2.9 years ago by • 0
0
votes
5
replies
879
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor brainarray genefilter oligo
updated 3.3 years ago by 58k • written 3.3 years ago by • 0
0
votes
1
reply
661
views
Unable to compile genefilter package
bioconductor genefilter compile
updated 3.6 years ago by 58k • written 3.6 years ago by • 0
0
votes
3
replies
1.0k
views
error in filtering genes with rowVars(gexpr(bg_chrX)) >1
genefilter ballgown
updated 3.7 years ago by • 0 • written 4.1 years ago by • 0
0
votes
1
reply
797
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
deseq2 filter genefilter
updated 3.8 years ago by 34k • written 3.9 years ago by • 0
1
vote
4
replies
1.1k
views
cran check shows that genefilter is not available
genefilter
3.8 years ago jinkaixiu ▴ 10
1
vote
3
replies
680
views
Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
4.0 years ago lirongrossmann ▴ 60
1
vote
5
replies
641
views
error when trying to apply the specific gene filter.
genefilter
4.2 years ago • updated 4.1 years ago DataFanatic • 0
6
votes
5
replies
11k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 4.7 years ago by 25k • written 4.7 years ago by ▴ 10
1
vote
4
replies
898
views
Error in the package of "genefilter" "nsFilter"
genefilter
updated 4.9 years ago by 58k • written 4.9 years ago by ▴ 20
3
votes
5
replies
1.2k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 20
3
votes
1
reply
596
views
Is it valid to use only genes of interest before eBayes step in limma?
limma genefilter
updated 5.2 years ago by ★ 27k • written 5.2 years ago by • 0
6
votes
6
replies
1.1k
views
genefilter filtered out 60% of the original genes?
genefilter edgeR
updated 5.4 years ago by ▴ 170 • written 5.4 years ago by ▴ 20
1
vote
1
reply
1.0k
views
Error using nsFilter() Error in (function (classes, fdef, mtable) unable to find an inherited method for function columns for signature function
genefilter
5.4 years ago Lucy • 0
2
votes
1
reply
904
views
Filtering array data with nsFilter
genefilter nsFilter
updated 5.4 years ago by 43k • written 5.4 years ago by • 0
0
votes
1
reply
666
views
Really weird results when I filter this new data that I have, script has worked on two previous data sets.
microarray limma genefilter
updated 5.5 years ago by 58k • written 5.5 years ago by • 0
0
votes
1
reply
740
views
nsFilter not filtering out all of the normgene->exon.
genefilter affymetrix microarrays
updated 5.6 years ago by 58k • written 5.6 years ago by • 0
2
votes
2
replies
780
views
I'm looking for a filtering method that it does't use genewise variances
genefilter liimma microarray
updated 5.7 years ago by 13k • written 5.7 years ago by ▴ 20
4
votes
4
replies
1.4k
views
Suggestions for non-specific filtering criteria with limma
limma genefilter
updated 5.7 years ago by 13k • written 5.8 years ago by ▴ 10
4
votes
4
replies
1.7k
views
DEXSeq and Independent filtering
dexseq deseq2 genefilter
updated 5.8 years ago by 13k • written 5.8 years ago by ▴ 20
2
votes
12
replies
1.3k
views
I want to order genes in GO groups
gene ontology genefilter
updated 6.0 years ago by ▴ 340 • written 6.0 years ago by ▴ 10
0
votes
2
replies
2.0k
views
Error with oligo: environmentIsLocked
oligo bioconductor genefilter
updated 6.1 years ago by 58k • written 6.1 years ago by ▴ 10
0
votes
1
reply
889
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 6.3 years ago by • 0 • written 14.7 years ago by ▴ 170
2
votes
7
replies
1.0k
views
why genefilter does not work for me ?
R microarray genefilter
6.6 years ago Nemo ▴ 80
4
votes
4
replies
1.8k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter R bioconductor differential gene expression
updated 6.7 years ago by 43k • written 6.7 years ago by ▴ 780
7
votes
5
replies
1.2k
views
Adjusted P values
limma genefilter
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 10
2
votes
4
replies
1.1k
views
filter.log in nsFilter function (package genefilter) gives null value
genefilter
updated 7.0 years ago by 58k • written 7.0 years ago by ▴ 10
1
vote
3
replies
6.6k
views
genefilter installation error
genefilter genefilter
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by ▴ 10
0
votes
1
reply
670
views
selection of probes, probesets mapping to the same gene
genefilter genefilter
updated 7.1 years ago by 13k • written 7.2 years ago by ▴ 680
0
votes
2
replies
738
views
Fwd: adjusted P-values
Cancer genefilter Cancer genefilter
updated 7.4 years ago by ★ 4.2k • written 7.4 years ago by ▴ 190
0
votes
0
replies
538
views
adjusted P-values
genefilter genefilter
7.4 years ago Guest User ★ 12k
0
votes
1
reply
3.0k
views
error in installing \"genefilter\"
genefilter genefilter
updated 7.4 years ago by 58k • written 7.4 years ago by ★ 12k
1
vote
1
reply
1.3k
views
Rosetta Resolver-like error-weighted ANOVAs in Bioconductor
Microarray genefilter affy Microarray genefilter affy
updated 7.5 years ago by 7.6k • written 7.5 years ago by ▴ 10
0
votes
4
replies
1.2k
views
genefilter kOverA filter by range
genefilter genefilter
updated 7.7 years ago by 58k • written 7.7 years ago by ▴ 220
0
votes
1
reply
784
views
Fwd: [devteam-bioc] information about genefilter package
Microarray genefilter limma Microarray genefilter limma
updated 7.9 years ago by 58k • written 7.9 years ago by 15k
0
votes
3
replies
1.4k
views
Problem installing genefilter (Ubuntu 12.04; Bioconductor v2.12)
genefilter genefilter
updated 8.1 years ago by 58k • written 8.1 years ago by ★ 12k
0
votes
9
replies
1.0k
views
Error in calculating P-values with Genefilter function
genefilter genefilter
updated 8.3 years ago by 58k • written 8.3 years ago by ★ 12k
0
votes
2
replies
1.9k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 30
0
votes
0
replies
655
views
analysis of HuGene2.0-st array affymetrix -aroma package
genefilter genefilter
8.5 years ago Andreia Fonseca ▴ 810
0
votes
1
reply
735
views
Help with installing genefilter -- "installed directory not writable"
Microarray genefilter Microarray genefilter
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by ▴ 10
0
votes
3
replies
985
views
Non-Specific Filtering with "nsFilter" Question
probe genefilter PROcess probe genefilter PROcess
updated 9.2 years ago by 58k • written 9.2 years ago by ▴ 160
0
votes
3
replies
1.3k
views
How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray Annotation Normalization GO probe genefilter affy limma oligo Microarray GO
updated 9.4 years ago by ▴ 190 • written 9.4 years ago by 58k
0
votes
1
reply
746
views
How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray Normalization probe genefilter limma oligo Microarray Normalization probe
updated 9.4 years ago by 58k • written 9.4 years ago by ▴ 190
50 results • Page 1 of 1
Recent ...
Replies
Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Awards • All
Teacher to Vincent J. Carey, Jr. 6.5k
Scholar to Rory Stark ★ 4.1k
Scholar to jbnrodriguez • 0
Scholar to Yang Liao ▴ 260
Scholar to James W. MacDonald 58k
Locations • All
EMBL Heidelberg / de.NBI, 36 minutes ago
Thailand, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
Canada, 1 hour ago
The city by the bay, 1 hour ago
Traffic: 197 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6