Question: failing to install the package org.Hs.eg.db in R (version 3.5.2 )
5 months ago by
biojun • 0
biojun • 0 wrote:
When I tried to install the package org.Hs.eg.db in R (version 3.5.2), I met some problems which are listed as follows.
Do you have any suggestions?
> BiocManager::install('org.Hs.eg.db') Bioconductor version 3.8 (BiocManager 1.30.4), R 3.5.2 (2018-12-20) Installing package(s) 'org.Hs.eg.db' installing the source package ‘org.Hs.eg.db’ trying URL 'http://mirrors.ustc.edu.cn/bioc//packages/3.8/data/annotation/src/contrib/org.Hs.eg.db_3.7.0.tar.gz' Content type 'application/gzip' length 77962833 bytes (74.4 MB) downloaded 74.4 MB * installing *source* package 'org.Hs.eg.db' ... ** R ** inst ** byte-compile and prepare package for lazy loading Error: package or namespace load failed for 'AnnotationDbi' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called 'DBI' Error : package 'AnnotationDbi' could not be loaded ERROR: lazy loading failed for package 'org.Hs.eg.db' * removing 'C:/Users/lijian/Documents/R/win-library/3.5/org.Hs.eg.db' In R CMD INSTALL The downloaded source packages are in ‘C:\Users\lijian\AppData\Local\Temp\RtmpyW47IQ\downloaded_packages’ installation path not writeable, unable to update packages: class, codetools, mgcv Warning message: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) : installation of package ‘org.Hs.eg.db’ had non-zero exit status
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