Question: alternative package to SPIA
0
gravatar for asifgeb
6 months ago by
asifgeb0
asifgeb0 wrote:

Hi, Is there any package which works similarly as SPIA (Signaling Pathway Impact Analysis ) package? I have log fold change values for a list of genes. Now, I want to use them for different pathway enrichment analyses to find out which pathway is up - or down- regulated.

ADD COMMENTlink written 6 months ago by asifgeb0

when searching Bioconductor package for enrichment analysis (search box to the right)

The following packages are found: gage miRNApath CHRONOS

You can also search the biocViews terms (search box to the left) Pathways Gene Set Enrichment Network Enrichment

Or any other terms you think are relevant to find packages that may be of use.

ADD REPLYlink written 6 months ago by shepherl ♦♦ 1.5k
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