Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
SPIA
•
reset
1
vote
2
replies
218
views
Error creating SPIA data for KEGG Orthology (KO) Database KEGG xml files
SPIA
6 weeks ago
Benji Bromberg
▴ 20
0
votes
0
replies
643
views
plotting Signalling Pathways using SPIA
SPIA
functional-analysis
Pathways
KEGG
3.7 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
747
views
alternative package to SPIA
SPIA
pathway enrichment analysis
overrepresentation
4.7 years ago
asifgeb
• 0
1
vote
2
replies
1.8k
views
Question on graphite/SPIA; extracting DE gene list
graphite
spia
runSPIA
updated 4.9 years ago by
Bioconductor Community
0 • written 8.7 years ago by
rgamini
• 0
0
votes
0
replies
839
views
SPIA function error in ToPASeq
ToPASeq
SPIA
pathway analysis
R
5.7 years ago
fawazfebin
▴ 60
0
votes
0
replies
1.1k
views
a possible bug in spia function
SPIA
6.3 years ago
slava.ilyntskyy
• 0
0
votes
0
replies
954
views
SPIA Package : Activated and Inhibited
SPIA
R
pathway analysis
6.4 years ago
khhgng
• 0
5
votes
2
replies
1.4k
views
SPIA::spia function output
SPIA
updated 6.9 years ago by
Tarca, Adi
▴ 570 • written 6.9 years ago by
theobroma22
▴ 10
0
votes
1
reply
1.0k
views
SPIA plotP giving error
SPIA
plotP
threshold
7.0 years ago
docpriya21
• 0
0
votes
0
replies
905
views
SPIA error in DE-Colorectal
SPIA
7.4 years ago
saamar.rajput
• 0
1
vote
2
replies
2.3k
views
(Gene-set)Pathway analysis based on network/pathway topology in R
SPIA
functional enrichment
pathway topology
pathway analysis
bioconductor
8.4 years ago
svlachavas
▴ 820
0
votes
1
reply
1.9k
views
SPIA error - names of de are not in reference array
SPIA
named vectors
pathway analysis
updated 16 months ago by
a.ghosh
• 0 • written 9.1 years ago by
A Eelmur
• 0
0
votes
0
replies
957
views
R: Re: Deseq2 and differentia expression
SPIA
SPIA
9.4 years ago
Simon Anders
★ 3.7k
0
votes
1
reply
1.2k
views
SPIA
Pathways
SPIA
Pathways
SPIA
updated 9.7 years ago by
Tarca, Adi
▴ 570 • written 9.7 years ago by
Guest User
★ 12k
0
votes
1
reply
1.6k
views
pathway analysis by SPIA using SPIA package vs graphite package
Pathways
SPIA
cycle
graphite
Pathways
SPIA
cycle
graphite
9.9 years ago
array chip
▴ 420
0
votes
1
reply
1.3k
views
makeSPIAdata
SPIA
SPIA
updated 9.9 years ago by
Tarca, Adi
▴ 570 • written 9.9 years ago by
David Price
▴ 10
0
votes
1
reply
2.4k
views
SPIA error - Error in density.default(pfstmp, bw = sd(pfstmp)/4) : \'bw\' is not positive.
SPIA
cycle
SPIA
cycle
updated 10.0 years ago by
Tarca, Adi
▴ 570 • written 10.0 years ago by
Guest User
★ 12k
0
votes
0
replies
1.1k
views
Background for test in SPIA package.
Annotation
Pathways
SPIA
Annotation
Pathways
SPIA
10.7 years ago
Ian Sudbery
▴ 30
0
votes
0
replies
1.6k
views
SPIA algorithm organisms not included already in the SPIA package
Organism
SPIA
goseq
KEGGREST
Organism
SPIA
goseq
KEGGREST
10.8 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.3k
views
changes in SPIA package: using updated KEGG pathway data
Organism
SPIA
Organism
SPIA
10.8 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.1k
views
Bioconductor Digest, Vol 119, Issue 5: Overrepresentation pathway with KEGGPROFILE and SPIA
Pathways
SPIA
KEGGprofile
Pathways
SPIA
KEGGprofile
10.9 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
946
views
Overrepresentation pathway with KEGGPROFILE and SPIA
SPIA
SPIA
10.9 years ago
gregory voisin
▴ 430
0
votes
3
replies
2.5k
views
Kegg pathways overlay with log fold change values
Pathways
limma
SPIA
Pathways
limma
SPIA
updated 11.5 years ago by
alessandro brozzi
▴ 120 • written 11.5 years ago by
Amit Kumar Kashyap
▴ 50
0
votes
2
replies
2.3k
views
Problem in SPIA: de must be a vector of log2 fold changes. The names of de should be included in the refference array!
Organism
limma
SPIA
Organism
limma
SPIA
updated 11.9 years ago by
Tarca, Adi
▴ 570 • written 11.9 years ago by
Moritz Kebschull
▴ 100
0
votes
0
replies
1.1k
views
Bioconductor resources for immunology
Pathways
GO
SPIA
Pathways
GO
SPIA
12.0 years ago
January Weiner
▴ 240
0
votes
0
replies
1.3k
views
SPIA package
Pathways
Organism
SPIA
Pathways
Organism
SPIA
12.0 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.1k
views
question for SPIA package
Pathways
SPIA
Pathways
SPIA
12.0 years ago
Jing Huang
▴ 380
0
votes
2
replies
1.2k
views
SPIA package
PROcess
SPIA
PROcess
SPIA
12.2 years ago
Jing Huang
▴ 380
0
votes
0
replies
970
views
question for you on SPIA package
Pathways
Organism
SPIA
Pathways
Organism
SPIA
12.2 years ago
Tarca, Adi
▴ 570
0
votes
2
replies
1.3k
views
question on SPIA pavkage application
Organism
SPIA
Organism
SPIA
updated 12.3 years ago by
Freudenberg, Johannes NIH/NIEHS [E]
▴ 150 • written 12.3 years ago by
Jing Huang
▴ 380
0
votes
1
reply
1.0k
views
a question on SPIA package
Microarray
SPIA
Microarray
SPIA
updated 12.3 years ago by
Alex Gutteridge
▴ 650 • written 12.3 years ago by
Jing Huang
▴ 380
0
votes
2
replies
1.5k
views
organism abbreviations (SPIA package)
Microarray
Organism
SPIA
Microarray
Organism
SPIA
updated 12.3 years ago by
Manca Marco PATH
▴ 340 • written 12.3 years ago by
Jing Huang
▴ 380
0
votes
1
reply
1.3k
views
Which resources for pathway analysis?
Pathways
Network
SPIA
DEGraph
Pathways
Network
SPIA
DEGraph
updated 12.8 years ago by
January Weiner
▴ 370 • written 12.8 years ago by
laurent jacob
▴ 100
0
votes
1
reply
1.1k
views
Which resources for pathway analysis?
Pathways
SPIA
Pathways
SPIA
updated 12.8 years ago by
Gilbert Feng
▴ 300 • written 12.8 years ago by
January Weiner
▴ 370
0
votes
1
reply
1.1k
views
SPIA package with updated KEGG pathways
Pathways
SPIA
Pathways
SPIA
updated 13.0 years ago by
Marc Carlson
★ 7.2k • written 13.0 years ago by
Bhaskar Dutta
▴ 20
0
votes
0
replies
886
views
Bioconductor Digest, Vol 94, Issue 10
Pathways
SPIA
Pathways
SPIA
13.0 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.2k
views
Bioconductor Digest, Vol 93, Issue 26: How to create KEGG's pathway data for SPIA?
Organism
KEGGgraph
SPIA
Organism
KEGGgraph
SPIA
13.0 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
891
views
How to create KEGG's pathway data for SPIA?
SPIA
SPIA
13.0 years ago
Lourdes Peña Castillo
▴ 140
0
votes
4
replies
1.2k
views
SPIA - changes between 1.4.0 and 1.60.
Pathways
SPIA
Pathways
SPIA
updated 13.2 years ago by
Sorin Draghici
▴ 20 • written 13.2 years ago by
Lavinia Gordon
▴ 480
0
votes
0
replies
990
views
SPIA with Mouse Data
Genetics
Network
Organism
SPIA
Genetics
Network
Organism
SPIA
13.3 years ago
Will Bush
▴ 10
0
votes
0
replies
922
views
SPIA package problem
Microarray
GO
Cancer
Organism
hgu95av2
mgug4122a
SPIA
Microarray
GO
Cancer
Organism
13.5 years ago
January Weiner
▴ 370
0
votes
0
replies
866
views
help with SPIA package
Organism
limma
SPIA
Organism
limma
SPIA
13.5 years ago
Barbara Bo-Ju Shih
▴ 40
0
votes
0
replies
789
views
MArray into data.frame for SPIA package
limma
marray
SPIA
limma
marray
SPIA
13.7 years ago
Gordon Smyth
48k
0
votes
1
reply
1.1k
views
SPIA package
graph
SPIA
graph
SPIA
updated 13.7 years ago by
Seth Falcon
★ 7.4k • written 13.7 years ago by
Marcos Pinho
▴ 200
0
votes
0
replies
1.3k
views
SPIA: inferring inhibited pathways from up-regulated genes?
Pathways
SPIA
Pathways
SPIA
14.0 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.1k
views
SPIA, hacked to run with only selected pathways
SystemsBiology
Pathways
Cancer
SPIA
SystemsBiology
Pathways
Cancer
SPIA
14.0 years ago
Tarca, Adi
▴ 570
46 results • Page
1 of 1
Recent ...
Replies
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
Basti
▴ 740
The image is blurred, but you need to follow ATpoint advice and restart the entire analysis using a clean environment.
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
486342583
• 0
This is my running code myDMP <- champ.DMP(beta = myNormA, pheno = myLoad$pd$Sample_Group, …
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
486342583
• 0
![enter image description here][1] Thank you for your reply. I am a beginner. What I meant was that I could have obtained this image yester…
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
ATpoint
★ 3.6k
I don't follow what you mean by "Normal" but in general, when you run code and it returns different results indicates that you might have o…
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
486342583
• 0
Thank you for your reply, but for some reason, when I ran this code yesterday, it was normal
Votes
A: DSS understanding delta option and posterior probability
Comment: Ensembl down???
Answer: How should I run ssGSEA Hallmark Enrichment Analysis?
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Comment: Problem loading HDF5Array in R 4.3.2
Awards
• All
Popular Question
to
Endre Sebestyén
▴ 70
Popular Question
to
ramonfallon
▴ 20
Popular Question
to
ATpoint
★ 3.6k
Popular Question
to
Jitendra
▴ 10
Popular Question
to
Robert Castelo
★ 3.0k
Locations
• All
Hong Kong,
1 minute ago
United Kingdom,
1 minute ago
United States,
3 minutes ago
EMBL Heidelberg,
4 minutes ago
United States,
4 minutes ago
Traffic: 850 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6