I am trying to forge a genome into BSgenome... but I am failing so far...every time I get different errors, but I am very stucked now with the following error message:
Error in getSeqSrcpaths(seqname, prefix = prefix, suffix = suffix, seqssrcdir = seqssrcdir) : file(s) not found: /data/fg2/guerrero/cheetahmethylation/MeDIPStest/genome/scaffolds/AciJub2NW_015130604.1.fasta
Which I have no idea how to solve, since my files (collection of fasta files, one per sequence to fogre) is in that very same folder and the file listed in the error as "not found", is exactly the first one in the folder... I thought it was a typo matter...but it seems not... I dunno if it has to do with the format I am using to define the seqnames in the seed file which looks like this:
*It seems that when posting it the underscores between characters are gone... which make it seem as though it's a typo error... but I swear is not...
seqnames: paste("NW0",seq(from=15130604,to=15144985,by=1),".1", sep="") seqfilesprefix: AciJub2 seqfiles_suffix: .fasta
I hope someone can give me any hints on this... it is also the first time I work with Bioconductor...
Cheers and thanks, :)