Showing : bsgenome • reset
1
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How to make OrgPackage (BSgenome data) package available for R Bioconductor users
BSGenome
updated 10 weeks ago by 15k • written 12 weeks ago by • 0
2
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7
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301
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Can I use BSgenome for in-house assemblies?
BSgenome
updated 12 weeks ago by 15k • written 3 months ago by • 0
3
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5
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253
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unable to forge custom BSgenome after update
BSgenome
updated 3 months ago by 15k • written 3 months ago by ▴ 80
0
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0
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89
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how to construct a SNPlocs-class by myself
BSgenome SNPlocs
3 months ago Guandong Shang ▴ 20
2
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4
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230
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BSGenome Forge for non-model organism
BSGenomeForge BSGenome
updated 3 months ago by 15k • written 3 months ago by • 0
0
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3
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359
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Can BSGenome forge from non-UCSC/NCBI assemblies?
BSgenome
updated 6 months ago by ▴ 10 • written 7 months ago by • 0
2
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2
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311
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Forging a BSGenome
BSgenome microtus forging
updated 7 months ago by 15k • written 7 months ago by • 0
1
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4
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272
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forging a BSgenome data package - Seed file issue
seedfiles BSgenome
8 months ago n.mary • 0
2
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2
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285
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How does one modify a single value of a field in a seqinfo object?
GenomicRanges GenomeInfoDb BSgenome isCircular
updated 8 months ago by 15k • written 10 months ago by ▴ 80
0
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3
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241
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submitting a BSgenome package
BSgenome
updated 8 months ago by 15k • written 8 months ago by • 0
0
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3
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397
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Error in Forge the target package (BSgenome)
software error BSgenome
10 months ago • updated 8 months ago jiazhou0116 • 0
1
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1
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218
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About generating a seed file (DCF format) for forging a BSgenome
software error BSgenome
updated 10 months ago by 15k • written 11 months ago by • 0
0
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0
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132
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Error in loading forged BSgenome
BSgenome msgbsR
10 months ago jiazhou0116 • 0
0
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1
reply
167
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How can i get repetitive elements genomic ranges in human genome?
repetitive elements IRanges GenomicRanges BSgenome
updated 11 months ago by 57k • written 11 months ago by ▴ 50
0
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1
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159
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error when forging a BSgenome
BSgenome
updated 14 months ago by 2.8k • written 14 months ago by ▴ 10
0
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4
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358
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Error in seqlevelsStyle after creating a BSgenome package
bsgenome MutationalPatterns
16 months ago • updated 15 months ago sibyl.bertrand • 0
0
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2
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192
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vmatchPattern error using a DNA string and BSgenome
Biostrings vmatchPattern BSgenome
16 months ago mb2subi • 0
2
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6
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250
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Can't find library BSgenome.Mmulatta.UCSC for latest genome (mmul10)
annotation mmul10 BSgenome
updated 20 months ago by 15k • written 20 months ago by ▴ 40
1
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0
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191
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News: New BSgenome data packages for bosTau9, rheMac10, danRer11, and galGal6
BSgenome News
20 months ago Hervé Pagès 15k
2
votes
1
reply
141
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Does "exclude" argument break BSgenome::vmatchPattern?
BSgenome
updated 20 months ago by 57k • written 20 months ago by ▴ 120
0
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6
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1.3k
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Error while attempting to forge BSgenome data package
bsgenome ggbio
updated 21 months ago by • 0 • written 6.8 years ago by • 0
3
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15
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520
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Error in creating BSGenome package
BSGenome
updated 21 months ago by 57k • written 21 months ago by • 0
0
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3
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389
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Defining BSgenome -> GRanges S4 coercer without package attaching
BSgenome methods GenomicRanges
23 months ago • updated 22 months ago Aditya ▴ 120
2
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3
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241
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What is the use of a masked BSgenome?
BSgenome BSgenome.Mmusculus.UCSC.mm10::Mmusculus Biostrings
updated 23 months ago by 2.8k • written 23 months ago by ▴ 120
1
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2
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283
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Is it useful to define and export a setAs('BSgenome', 'GRanges')
BSgenome GenomicRanges
updated 23 months ago by 11k • written 23 months ago by ▴ 120
0
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2
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336
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getBSgenome{Bsgenome}: avoid attaching BiocGenerics (and others)
BSgenome Bsgenome.Mmusculus.UCSC.mm10
23 months ago Aditya ▴ 120
1
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6
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787
views
How to subset a BSgenome
BSgenome BSgenome.Mmusculus.UCSC.mm10
updated 24 months ago by 2.8k • written 24 months ago by ▴ 120
0
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6
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319
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error when using matchProbePair with BSgenome.Hsapiens.UCSC.hg19
matchProbePair BSgenome Biostrings BSgenome.Hsapiens.UCSC.hg19
updated 2.2 years ago by 57k • written 2.2 years ago by • 0
0
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1
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274
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getSeqSrcpaths (forgeBSgenome) error files not found, but they are right there....
bsgenome forgebsgenome getSeqSrcpaths
2.3 years ago tguerreroa90 • 0
2
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1
reply
303
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Do TxDb objects contain info about non-transcriptionally active regions?
TxDb GRanges BSGenome variant annotation
updated 2.4 years ago by 57k • written 2.4 years ago by ▴ 40
0
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9
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467
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Unable to generate feature vector with custom genome in cleanUpdTSeq
cleanUpdTSeq BSgenome BSgenomeForge
updated 2.4 years ago by ★ 4.3k • written 2.4 years ago by • 0
2
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2
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579
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BSgenome package building
bsgenome
updated 2.8 years ago by 57k • written 2.8 years ago by • 0
3
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5
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724
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Include and implement a new reference genome option in the R package BSgenome for downstream variant calling analysis
bsgenome variant calling whole exome sequence gencode reference genome
updated 2.9 years ago by 15k • written 2.9 years ago by ▴ 780
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5
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527
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Custom BSgenome with makeTxDbFromGFF
bsgenome genomicfeatures
3.0 years ago michael.weber.1 • 0
6
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3
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777
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News: New Bioconductor package for dbSNP151
SNPlocs.Hsapiens.dbSNP151.GRCh38 BSgenome News
3.1 years ago Hervé Pagès 15k
0
votes
1
reply
370
views
extract codon position via BSgenome
bsgenome
updated 3.1 years ago by 15k • written 3.1 years ago by • 0
1
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12
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1.6k
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error in loadFun(x,seqname,ranges). BSgenome.Hsapiens.UCSC.hg19
bsgenome
updated 3.2 years ago by 57k • written 3.2 years ago by ▴ 10
1
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6
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772
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MEDIP: Problem with MEDIPS.createSet
medips bsgenome medip-seq
updated 3.4 years ago by ▴ 550 • written 3.4 years ago by • 0
2
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3
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621
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What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome chromosome reference genome
updated 3.4 years ago by 15k • written 3.4 years ago by ▴ 10
2
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1
reply
513
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Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
updated 3.4 years ago by 57k • written 3.4 years ago by • 0
0
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1
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1.0k
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How to name the custom genome in karyoploteR ?
software error R bsgenome karyoploter
updated 3.7 years ago by ▴ 130 • written 3.7 years ago by • 0
0
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1
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809
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add new genome as Bsgenome object
bsgenome
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
0
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2
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657
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BSgenome.Dmelanogaster.UCSC.dm6 annotation issue
bsgenome BSgenome.Dmelanogaster.UCSC.dm6
3.9 years ago jbeira • 0
1
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3
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1.2k
views
BSgenome Sscrofa 11.1
sus scrofa bsgenome
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
4
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1
reply
1.1k
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Getting "negative length vectors are not allowed" error in BSgenome::getSeq
BSgenome getSeq
updated 4.0 years ago by 25k • written 4.0 years ago by ▴ 90
4
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3
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909
views
Extracting sequences from BSgenomeViews object
sequence bsgenome
updated 4.0 years ago by 25k • written 4.0 years ago by ▴ 10
0
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2
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1.1k
views
add annotation features to BSgenome or txdb package
bsgenome txdb annotation orgdb
4.0 years ago Didi ▴ 10
2
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5
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1.2k
views
Forge a BSgenome data package
bsgenome bsgenome forge
4.5 years ago • updated 4.0 years ago jodiera • 0
1
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8
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890
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CRISPRseek with genome not available in BSgenome
bsgenome crisprseek
updated 4.1 years ago by ★ 4.3k • written 4.4 years ago by • 0
0
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2
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622
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Human reference primary assembly and masking using BioStrings and BSgenome
biostrings R bsgenome
4.1 years ago rockyb • 0
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If you used the QIASeq miRNA library, then you are wasting your time. That library adds the UMI barcodes and is intended for you to then up…
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