igraph clustering for gene coexpression network
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@aiswaryabioinfo-15154
Last seen 7 weeks ago

I have a gene co-expression network obtained from RNA-seq data which has more than 10000 nodes and more than 10lakh edges. I need to cluster this network. Can anyone please suggest a method to cluster this effectively.

I tried with igraph R package, in igraph package many clustering methods are there. How can I identify which is the appropriate method for large gene co-expression network.

igraph network gene corexpression rna-seq • 458 views
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Cross-posted to Biostars https://www.biostars.org/p/372731/

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