Bioconductor Igraph

Showing : igraph • reset

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615

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GRanges igraph

updated 15 months ago by Lluís Revilla Sancho ▴ 730 • written 15 months ago by Bogdan ▴ 670

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522

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WGCNA igraph

17 months ago María José • 0

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1.1k

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igraph networkanalysis Phylogenetics phyloseq

3.3 years ago Chantel • 0

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2.9k

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R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial

updated 4.4 years ago by Martin Morgan 25k • written 4.4 years ago by crgarcia • 0

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1.5k

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igraph network gene corexpression rna-seq

updated 2.7 years ago by Gordon Smyth 50k • written 5.1 years ago by aiswaryabioinfo • 0

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1.2k

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STRINGdb igraph

5.1 years ago Samuel Lee • 0

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1.4k

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scater scran igraph scRNA-Seq rots

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by hamza_karakurt ▴ 50

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900

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igraph miR2Pathway Pathway page_rank

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by genomic8328 ▴ 10

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984

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graph pathways igraph

6.1 years ago genomic8328 ▴ 10

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3.3k

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igraph

6.5 years ago Andrew Box ▴ 10

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1.5k

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QuACN igraph

6.7 years ago lljotall ▴ 10

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2.0k

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igraph spade

updated 6.9 years ago by johnheath346 • 0 • written 8.4 years ago by duncanjamesmurray01 • 0

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1.6k

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installation package installation topaseq igraph LD_LIBRARY_PATH

7.3 years ago jan.soderman • 0

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957

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ppi network analysis igraph

7.9 years ago Abhishek Pratap ▴ 190

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1.2k

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igraph software error adjacency matrix

updated 7.9 years ago by Paul Shannon ▴ 470 • written 7.9 years ago by Angel ▴ 40

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1.1k

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RamiGO R gene ontology igraph

8.2 years ago bkellman • 0

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2.7k

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igraph

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by Angel ▴ 40

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1.9k

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FEM igraph

updated 8.5 years ago by andrew • 0 • written 8.5 years ago by sirintra ▴ 10

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2.0k

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software error geNet igraph genetclassifier

updated 8.7 years ago by saibar ▴ 20 • written 8.7 years ago by alakatos ▴ 130

19 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length