Showing : igraph • reset
1
vote
2
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389
views
KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
12 weeks ago • updated 7 weeks ago Arindam ▴ 80
0
votes
1
reply
799
views
GRanges list convert into igraph format
GRanges igraph
updated 22 months ago by ▴ 760 • written 22 months ago by ▴ 670
0
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0
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664
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coexpression networks
WGCNA igraph
2.0 years ago María José • 0
0
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0
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1.3k
views
Co-occurrence Network Analysis between Algae and Bacteria
igraph networkanalysis Phylogenetics phyloseq
3.9 years ago Chantel • 0
0
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2
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3.3k
views
Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial
updated 5.0 years ago by 25k • written 5.0 years ago by • 0
0
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1
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1.8k
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igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 3.3 years ago by 52k • written 5.7 years ago by • 0
0
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2
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1.5k
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STRING_id mismatch with STRINGdb
STRINGdb igraph
5.7 years ago Samuel Lee • 0
2
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5
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1.8k
views
Modularity values of clusters and Differential Expression in scRNA-Seq
scater scran igraph scRNA-Seq rots
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 60
0
votes
1
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1.1k
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph miR2Pathway Pathway page_rank
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 10
0
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0
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1.1k
views
igraph PoTRA error
graph pathways igraph
6.7 years ago genomic8328 ▴ 10
0
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2
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3.6k
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get vertex xy coords from igraph mst plot
igraph
7.1 years ago Andrew Box ▴ 10
1
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1
reply
1.6k
views
QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN igraph
7.3 years ago lljotall ▴ 10
0
votes
2
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2.2k
views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph spade
updated 7.5 years ago by • 0 • written 9.0 years ago by • 0
0
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0
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1.8k
views
failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
7.9 years ago jan.soderman • 0
0
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0
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1.1k
views
project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi network analysis igraph
8.5 years ago Abhishek Pratap ▴ 190
2
votes
2
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1.4k
views
taking intersection between 6 networks by graph.intersect
igraph software error adjacency matrix
updated 8.6 years ago by ▴ 470 • written 8.6 years ago by ▴ 40
0
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0
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1.3k
views
read tree fails for large trees
RamiGO R gene ontology igraph
8.8 years ago bkellman • 0
2
votes
4
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2.9k
views
getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 8.9 years ago by 16k • written 8.9 years ago by ▴ 40
0
votes
1
reply
2.0k
views
Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM igraph
updated 9.1 years ago by • 0 • written 9.1 years ago by ▴ 10
0
votes
4
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2.2k
views
Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 9.4 years ago by ▴ 20 • written 9.4 years ago by ▴ 130
20 results • Page 1 of 1
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Comment: Running multiple KNN queries in parallel by SamGG ▴ 360
Thank you for your detailed answer, I appreciate it and your work.
Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k
That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …
Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k
The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Votes
Answer: Running multiple KNN queries in parallel
Answer: Running multiple KNN queries in parallel
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
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Scholar to Aaron Lun ★ 28k
Teacher to Michael Love 43k
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Scholar to ATpoint ★ 4.6k
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