Bioconductor Igraph

Showing : igraph • reset

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227

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GRanges igraph

updated 4 months ago by Lluís Revilla Sancho ▴ 710 • written 4 months ago by Bogdan ▴ 660

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207

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WGCNA igraph

6 months ago María José • 0

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743

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igraph networkanalysis Phylogenetics phyloseq

2.4 years ago Chantel • 0

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2.3k

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R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial

updated 3.5 years ago by Martin Morgan 25k • written 3.5 years ago by crgarcia • 0

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1.1k

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igraph network gene corexpression rna-seq

updated 21 months ago by Gordon Smyth 47k • written 4.2 years ago by aiswaryabioinfo • 0

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905

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STRINGdb igraph

4.2 years ago Samuel Lee • 0

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947

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scater scran igraph scRNA-Seq rots

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by hamza_karakurt ▴ 50

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653

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igraph miR2Pathway Pathway page_rank

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by genomic8328 ▴ 10

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730

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graph pathways igraph

5.2 years ago genomic8328 ▴ 10

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2.7k

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igraph

5.6 years ago Andrew Box ▴ 10

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1.2k

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QuACN igraph

5.8 years ago lljotall ▴ 10

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1.8k

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igraph spade

updated 6.0 years ago by johnheath346 • 0 • written 7.5 years ago by duncanjamesmurray01 • 0

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1.4k

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installation package installation topaseq igraph LD_LIBRARY_PATH

6.4 years ago jan.soderman • 0

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767

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ppi network analysis igraph

7.0 years ago Abhishek Pratap ▴ 190

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974

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igraph software error adjacency matrix

updated 7.0 years ago by Paul Shannon ▴ 470 • written 7.1 years ago by Angel ▴ 40

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997

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RamiGO R gene ontology igraph

7.3 years ago bkellman • 0

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2.3k

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igraph

updated 7.4 years ago by Hervé Pagès 16k • written 7.4 years ago by Angel ▴ 40

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1.6k

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FEM igraph

updated 7.6 years ago by andrew • 0 • written 7.6 years ago by sirintra ▴ 10

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1.7k

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software error geNet igraph genetclassifier

updated 7.8 years ago by saibar ▴ 20 • written 7.8 years ago by alakatos ▴ 120

19 results • Page 1 of 1

Recent ...

Replies

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

No, you are not losing power. The two possible limma analyses (fixed or random Subject effects) are both more powerful than the alternative…

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

Thanks Gordon Actually, I am working in the clinical statistics department for the last 5 years, even though a bioinformatician, and the "…

Answer: DESeq2 + analysis question for design with uneven time point design by Michael Love 40k

I'd recommend reaching out to a local statistician or someone familiar with linear models in R. Unfortunately, I have to reserve my time on…

Answer: Genes with highest differential expression have very low read counts for most ge by Michael Love 40k

Have you use `lfcShrink`? Or `results` with `lfcThreshold`? Either of these are recommended for prioritizing DE genes.

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

> equivqalent in limma would be like a gene by gene specificic design matrix where no BL time point would exist but a continuous variable t…

Votes

A: Ranges from a fasta file

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Awards • All

Scholar to Mike Smith ★ 6.0k