I am following this tutorial: https://rockefelleruniversity.github.io/RUATACWorkshop.html
I tried the most recent version of soGGi but also the one of the tutorial (1.10.4).
nucFree <- regionPlot(bamFile = sortedBAM, testRanges = TSSs, style = "point", format = "bam", paired = TRUE, minFragmentLength = 0, maxFragmentLength = 100, forceFragment = 50)
I get the error:
Error in .validate_names(rownames, ans_rownames, "assay rownames()", "rowData rownames() / rowRanges names()") : assay rownames() must be NULL or identical to rowData rownames() / rowRanges names()
I found that it has to do with "SummarizedExperiment": https://support.bioconductor.org/p/83850/
Can that be corrected in the package?