Question: DEP p.val adjustment
0
gravatar for 826599
10 days ago by
8265990
8265990 wrote:

Hi,

I was just wondering if anybody knew the adjustment DEP uses for the p.val adj column in it's output?

Thanks

adjustment dep p.vals • 64 views
ADD COMMENTlink modified 10 days ago by James W. MacDonald49k • written 10 days ago by 8265990
Answer: DEP p.val adjustment
0
gravatar for James W. MacDonald
10 days ago by
United States
James W. MacDonald49k wrote:

Have you read the help page for test_diff? It says:

Value
       A SummarizedExperiment object containing FDR estimates of differential expression

And FDR is generally assumed to mean Benjamini and Hochberg's method (for example, if you ask p.adjust to use fdr, you get BH).

ADD COMMENTlink written 10 days ago by James W. MacDonald49k
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