0
9 weeks ago by
8265990
8265990 wrote:

Hi,

I was just wondering if anybody knew the adjustment DEP uses for the p.val adj column in it's output?

Thanks

adjustment dep p.vals • 81 views
modified 9 weeks ago by James W. MacDonald50k • written 9 weeks ago by 8265990
0
9 weeks ago by
United States
James W. MacDonald50k wrote:

Have you read the help page for test_diff? It says:

Value
A SummarizedExperiment object containing FDR estimates of differential expression



And FDR is generally assumed to mean Benjamini and Hochberg's method (for example, if you ask p.adjust to use fdr, you get BH).