Bioconductor Adjustment

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1.9k

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limma adjustment voom removeBatchEffect covariates

19 months ago sukeshinik5 ▴ 20

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1.3k

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DEP P.vals adjustment

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by 826599 ▴ 10

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2.9k

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cell types differential expression adjustment mixtures rnaseq

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by aec ▴ 90

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5.7k

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RNA rnaseq Covariate adjustment deseq

updated 9.9 years ago by Michael Love 43k • written 9.9 years ago by sjs0282 • 0

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4.5k

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limma gene expression confounding adjustment paired

10.3 years ago Loodramon • 0

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7.6k

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limma covariate continuous categorical adjustment

updated 10.6 years ago by Gordon Smyth 53k • written 10.6 years ago by sg45653 • 0

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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k